cython + htslib == fast VCF and BCF processing
☆447Jun 25, 2026Updated 2 months ago
Alternatives and similar repositories for cyvcf2
Users that are interested in cyvcf2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- annotate a VCF with other VCFs/BEDs/tabixed files☆404Jun 16, 2026Updated 2 months ago
- genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF☆152Feb 17, 2026Updated 6 months ago
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆227Sep 18, 2025Updated 11 months ago
- a lightweight db framework for exploring genetic variation.☆328Apr 28, 2020Updated 6 years ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆873May 2, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Python package for exploring and analysing genetic variation data☆316Updated this week
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆333Updated this week
- Plot structural variant signals from many BAMs and CRAMs☆572Jul 13, 2024Updated 2 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆109Dec 14, 2020Updated 5 years ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆267Jun 17, 2024Updated 2 years ago
- Structural variant toolkit for VCFs☆422May 22, 2026Updated 3 months ago
- Bayesian haplotype-based mutation calling☆326Feb 13, 2026Updated 6 months ago
- Haplotype VCF comparison tools☆471Dec 7, 2023Updated 2 years ago
- Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…☆909Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- The D4 Quantitative Data Format☆175Nov 28, 2025Updated 9 months ago
- python access to UCSC genomes database☆138Aug 27, 2020Updated 6 years ago
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings