PARE: a computational method to Predict Active Regulatory Elements
☆11Aug 8, 2025Updated 11 months ago
Alternatives and similar repositories for PARE
Users that are interested in PARE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A python script used to annotate genomic intervals.☆18May 29, 2020Updated 6 years ago
- Python-based UCSC genome browser snapshot-taker and gallery-maker☆12May 21, 2024Updated 2 years ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆27Oct 5, 2015Updated 10 years ago
- ☆17Feb 9, 2020Updated 6 years ago
- significance testing over interval overlaps☆30Jul 11, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Jul 7, 2023Updated 3 years ago
- A tool for bigWig files.☆118May 23, 2018Updated 8 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Nov 21, 2018Updated 7 years ago
- Log command line events to a graph database :)☆13Mar 12, 2016Updated 10 years ago
- ☆17Sep 24, 2013Updated 12 years ago
- Subsampling of high-throughput sequencing count data☆20May 10, 2019Updated 7 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Apr 12, 2024Updated 2 years ago
- Ritornello is a high fidelity control free ChIP-seq peak calling algorithm☆13Aug 23, 2018Updated 7 years ago
- A light-weight HTML lab notebook generator☆18Jun 16, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Run Picard on BAM files and collate 90 metrics into one file.☆40Sep 27, 2017Updated 8 years ago
- What's The Function of these genes?☆22Mar 17, 2017Updated 9 years ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆53Nov 5, 2022Updated 3 years ago
- Quantitative Allele Specific Analysis of Reads. Joint genotyping & ASE inference for RNA-seq data☆29Feb 4, 2017Updated 9 years ago
- ☆24May 15, 2019Updated 7 years ago
- Applying IDR analysis to Homer peaks.☆18May 8, 2020Updated 6 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆23Sep 7, 2019Updated 6 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Nov 22, 2017Updated 8 years ago
- Enriched Domain Detector for ChIP-seq data☆16Aug 17, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- cyclone☆19Jul 21, 2015Updated 11 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Dec 12, 2018Updated 7 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆12Jun 17, 2024Updated 2 years ago
- bradner lab computation pipeline scripts☆54Aug 22, 2025Updated 11 months ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Nov 16, 2022Updated 3 years ago
- Peakzilla is a self-learning algorithm to identify transcription factor binding sites from ChIP-seq data. I would be very happy if you tr…☆21Aug 18, 2025Updated 11 months ago
- Demonstrating the PRoot program☆11Jul 29, 2016Updated 9 years ago
- Chromatin segmentation in R☆19Feb 4, 2018Updated 8 years ago
- Q ChIP-seq peak caller☆18Jul 17, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Code in Clustering Review Ronan et al. 2016☆13Mar 10, 2016Updated 10 years ago
- ☆10Jul 1, 2020Updated 6 years ago
- Tree hidden Markov model for learning epigenetic states in multiple cell types☆29Jul 11, 2013Updated 13 years ago
- add DNA sequence motifs to ggplot☆13Jun 20, 2018Updated 8 years ago
- Causal Variant Evidence Mapping with Non-parametric resampling☆12Dec 16, 2020Updated 5 years ago
- Single Cell Epigenome-based Inference of Activity☆19Sep 27, 2023Updated 2 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆32Oct 9, 2017Updated 8 years ago