spundhir / PARELinks
PARE: a computational method to Predict Active Regulatory Elements
☆11Updated 6 years ago
Alternatives and similar repositories for PARE
Users that are interested in PARE are comparing it to the libraries listed below
Sorting:
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 6 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- GTEx analysis scripts☆20Updated 8 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Genomic Association Tester☆31Updated 2 years ago
- Enriched Domain Detector for ChIP-seq data☆16Updated 2 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- Tutorials covering various topics in genomic data analysis.☆17Updated 6 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- R package for Methylation-based Inference of Regulatory Activity☆13Updated 5 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 3 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Ritornello is a high fidelity control free ChIP-seq peak calling algorithm☆13Updated 6 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated last month
- ☆13Updated 7 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 10 months ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Updated 9 years ago
- Filters for false-positive mutation calls in NGS☆30Updated 6 years ago
- ☆17Updated 5 years ago