Alternatives and similar repositories for fluff:

Users that are interested in fluff are comparing it to the libraries listed below

• Danko-Lab / rtfbs_db
  Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.
  ☆22Updated 6 years ago
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆38Updated 2 years ago
• slowkow / picardmetrics
  Run Picard on BAM files and collate 90 metrics into one file.
  ☆41Updated 7 years ago
• hms-dbmi / spp
  SPP - R package for analysis of ChIP-seq and other functional sequencing data
  ☆42Updated 3 years ago
• AndreasHeger / gat
  Genomic Association Tester
  ☆31Updated 2 years ago
• jmw86069 / splicejam
  Sashimi plots for RNA-seq data using detected transcripts
  ☆28Updated last month
• thelovelab / tximeta
  Transcript quantification import with automatic metadata detection
  ☆68Updated 3 months ago
• olgabot / sj2psi
  Convert RNA-STAR aligner "SJ.out.tab" files to "Percent spliced-in" (Psi) scores
  ☆8Updated 9 years ago
• Danko-Lab / tutorials
  Tutorials covering various topics in genomic data analysis.
  ☆17Updated 6 years ago
• bartongroup / RATS
  Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
  ☆34Updated 2 years ago
• slowkow / CENTIPEDE.tutorial
  How to use CENTIPEDE to determine if a transcription factor is bound.
  ☆26Updated 7 years ago
• pachterlab / sircel
  Identify cell barcodes from single-cell genomics sequencing experiments
  ☆43Updated 3 years ago
• CompEpigen / methrix
  An R for fast and flexible DNA methylation analysis
  ☆32Updated 9 months ago
• daler / trackhub
  create, manage, and upload track hubs for use in the UCSC genome browser
  ☆54Updated last year
• griffithlab / genviz.org
  Genomic data interpretation and visualization Workshop
  ☆19Updated last year
• saketkc / rna-seq-snakemake
  Snakemake based pipeline for RNA-Seq analysis
  ☆31Updated 5 years ago
• AstraZeneca-NGS / disambiguate
  Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem
  ☆31Updated 6 years ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago
• databio / MIRA
  R package for Methylation-based Inference of Regulatory Activity
  ☆13Updated 5 years ago
• ge11232002 / TFBSTools
  Software Package for Transcription Factor Binding Site (TFBS) Analysis
  ☆28Updated last month
• PhanstielLab / bedtoolsr
  R package wrapping bedtools
  ☆40Updated last month
• ChristopherWilks / megadepth
  BigWig and BAM utilities
  ☆96Updated last year
• shawnzhangyx / PePr
  a peak-calling and differential analysis tool for replicated ChIP-Seq data
  ☆37Updated 2 years ago
• YeoLab / outrigger
  Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data
  ☆65Updated 5 years ago
• rchereji / plot2DO
  A tool to assess the quality and distribution of genomic data
  ☆16Updated 3 years ago
• SamBuckberry / RUN-WGCNA
  Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)
  ☆28Updated 9 years ago
• nghiavtr / FuSeq
  ☆33Updated 3 years ago
• costasilvati / consexpression
  Tool for RNA-Seq analysis.
  ☆39Updated 3 years ago
• mahmoudibrahim / JAMM
  JAMM Peak Finder for Sequencing Datasets
  ☆29Updated 5 years ago
• Clinical-Genomics / fusion-report
  Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…
  ☆26Updated 3 weeks ago