simonvh / fluffLinks
Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing experiments.
☆71Updated last year
Alternatives and similar repositories for fluff
Users that are interested in fluff are comparing it to the libraries listed below
Sorting:
- A small R package to make sequencing read coverage plots in R.☆39Updated 3 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Transcript quantification import with automatic metadata detection☆67Updated last week
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 5 months ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 6 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 5 months ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Genomic data interpretation and visualization Workshop☆21Updated last month
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆53Updated last month
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 4 months ago
- Fast fusion detection using kallisto☆79Updated 3 months ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- create, manage, and upload track hubs for use in the UCSC genome browser☆54Updated last year
- Differential ATAC-seq toolkit☆27Updated last year
- interactive plots for differential expression analysis☆34Updated 2 months ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆38Updated last year
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- A tool for Read Multi-Mapper Resolution☆24Updated 8 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- Useful tools for working with Salmon output☆38Updated 5 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 7 years ago
- BigWig and BAM utilities☆97Updated last year