wurst-theke / bratwurstLinks
R package for wrapper functions, preprocessing, NMF and postprocessing
☆12Updated 7 years ago
Alternatives and similar repositories for bratwurst
Users that are interested in bratwurst are comparing it to the libraries listed below
Sorting:
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated 2 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Tools for processing UMI RNA-tag data☆131Updated 2 years ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆76Updated 2 months ago
- Battenberg algorithm and associated implementation script☆53Updated 4 years ago
- R package containing useful functions for mutational signature analysis☆83Updated this week
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆147Updated 4 years ago
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 7 months ago
- GLASS consortium☆40Updated 5 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆116Updated 6 months ago
- ☆61Updated 5 years ago
- ATAC-seq lab for BIOINF545☆24Updated 5 months ago
- AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…☆104Updated 3 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated 9 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated 2 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 5 months ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- Transcript quantification import for modular pipelines☆141Updated last month
- Genetic multiplexing of barcoded single cell RNA-seq☆127Updated last year
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆37Updated last year
- ☆71Updated 2 years ago
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆32Updated 5 years ago
- Pipeline for processing inDrops sequencing data☆76Updated 6 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆103Updated 2 years ago
- A pipeline and a framework for NGS analysis (RNA-seq and scRNA-seq)☆54Updated last month
- DNA methylation analysis notes from Ming Tang☆87Updated 5 years ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆120Updated last year
- A tool for bigWig files.☆119Updated 7 years ago