wurst-theke / bratwurst
R package for wrapper functions, preprocessing, NMF and postprocessing
☆12Updated 7 years ago
Related projects ⓘ
Alternatives and complementary repositories for bratwurst
- ☆33Updated 5 years ago
- <<------ Use SnapATAC!!☆25Updated 5 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆42Updated 3 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 3 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆42Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated last month
- Clone identification from single-cell data☆59Updated 2 years ago
- ☆40Updated 6 years ago
- ATAC-seq lab for BIOINF545☆25Updated 8 months ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆43Updated 2 years ago
- ☆37Updated 4 years ago
- GLASS consortium☆37Updated 4 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆29Updated 6 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- ☆46Updated last year
- Epimap processing and analysis code repository☆33Updated 2 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆54Updated last month
- epigenome analysis to rank transcription factors☆30Updated last year
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆62Updated 4 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated last year
- R code for single-cell analysis of intestinal epithelial cells☆21Updated 6 years ago
- Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neu…☆20Updated 7 years ago
- scRNA-seq cell type identification☆41Updated 5 years ago
- ☆27Updated 3 years ago
- An R package to time somatic mutations☆59Updated 3 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆75Updated 2 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 3 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 6 years ago
- Robust Allele Specific Quantification and quality controL☆37Updated 2 years ago