Maarten-vd-Sande / qnormLinks
Fast-ish (and correct!) quantile normalization in Python.
☆31Updated 7 months ago
Alternatives and similar repositories for qnorm
Users that are interested in qnorm are comparing it to the libraries listed below
Sorting:
- Normalization of RNA-seq gene expression☆104Updated 6 months ago
- Porting DESeq2 into python via rpy2☆67Updated 2 years ago
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆96Updated last year
- This repository hosts a minimal version of a Python API for BPNet.☆53Updated 2 months ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆86Updated 3 months ago
- Updated DANPOS2 to work with python3☆23Updated last year
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆84Updated 4 years ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆72Updated 2 years ago
- machine-readable file format for genomic library sequence and structure☆126Updated 4 months ago
- Tools for working with BUS files☆102Updated 7 months ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆119Updated 3 years ago
- A simple pythonic interface to biomart.☆57Updated 5 years ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆123Updated 3 months ago
- Notes on single-cell Hi-C technologies, tools, and data☆86Updated last year
- code to run sei and obtain sei and sequence class predictions☆110Updated 3 years ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 9 months ago
- Parsing tools for GTF (gene transfer format) files☆125Updated 10 months ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆32Updated 4 years ago
- liftover for python, made fast with cython☆95Updated 3 months ago
- sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale☆93Updated 10 months ago
- Tools for making plots of genomic datasets in a genome-browser-like format☆33Updated last year
- Lightweight converter between hic and cool contact matrices.☆74Updated last year
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Updated 11 months ago
- TF MOtif Discovery from Importance SCOres☆161Updated last month
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆201Updated 4 months ago
- ☆61Updated 7 months ago
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆111Updated 2 months ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆70Updated last year
- A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction☆97Updated last month
- Python biomart API☆69Updated 2 years ago