Fast-ish (and correct!) quantile normalization in Python.
☆31Jun 5, 2025Updated 9 months ago
Alternatives and similar repositories for qnorm
Users that are interested in qnorm are comparing it to the libraries listed below
Sorting:
- Single cell ANANSE Gene-regulatory-network analysis from Seurat objects☆10Nov 12, 2023Updated 2 years ago
- Porting DESeq2 into python via rpy2☆67Jun 1, 2023Updated 2 years ago
- ☆31Jul 8, 2025Updated 7 months ago
- bioinfo workflow based on snakemake☆14Feb 22, 2024Updated 2 years ago
- Documentations and Tutorials of Gosling.js☆12Sep 13, 2021Updated 4 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Dec 9, 2021Updated 4 years ago
- A GPU version of SAIGE for full GRM GWAS analysis☆19Aug 6, 2025Updated 7 months ago
- latentcor is an R package provides estimation for latent correlation with mixed data types (continuous, binary, truncated and ternary).☆16Nov 18, 2025Updated 3 months ago
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆39Updated this week
- Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workf…☆168Feb 24, 2026Updated last week
- ☆19Mar 24, 2023Updated 2 years ago
- Server component for HiGlass that manages and serves tiled data☆21May 23, 2023Updated 2 years ago
- Single Cell Epigenome-based Inference of Activity☆19Sep 27, 2023Updated 2 years ago
- Updated DANPOS2 to work with python3☆24Feb 25, 2026Updated last week
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.☆24Sep 23, 2024Updated last year
- TF MOtif Discovery from Importance SCOres☆168Feb 20, 2026Updated 2 weeks ago
- ☆53Nov 14, 2023Updated 2 years ago
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated last year
- Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer☆64Updated this week
- ☆33Nov 9, 2022Updated 3 years ago
- Avocado is a multi-scale deep tensor factorization model that learns a latent representation of the human epigenome and enables imputatio…☆120Mar 17, 2022Updated 3 years ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆34Dec 11, 2025Updated 2 months ago
- Predicting regulatory DNA elements based on epigenomic signatures☆30Jun 26, 2024Updated last year
- Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)☆30May 16, 2025Updated 9 months ago
- HemTools: a collection of NGS pipelines and bioinformatic analyses☆74Updated this week
- Concise: Keras extension for regulatory genomics☆35Dec 26, 2022Updated 3 years ago
- GWAS Survival Package in R☆13Nov 16, 2023Updated 2 years ago
- rnalib: a python-based transcriptomics library☆11Jan 23, 2026Updated last month
- Blazing fast toolkit to work with .hic and .cool files☆42Updated this week
- ☆37Sep 5, 2024Updated last year
- Tools for making plots of genomic datasets in a genome-browser-like format☆33Dec 6, 2024Updated last year
- satMiner: A Toolkit to NGS satellite DNA mining and analysis☆11Mar 10, 2022Updated 3 years ago
- Sliding Window Inference for Network Generation☆10Feb 14, 2018Updated 8 years ago
- ☆10Dec 8, 2023Updated 2 years ago
- Hybrid method based on a variable-order de bruijn Graph for the error Correction of Long Reads☆11Jan 20, 2021Updated 5 years ago
- R package for nonparametric estimation of counterfactual survival functions and survival contrasts from right-censored data with an obser…☆13Jul 7, 2023Updated 2 years ago
- MultiSuSiE is a multi-ancestry extension of the Sum of Single Effects model☆16Feb 15, 2026Updated 3 weeks ago
- ☆12Aug 6, 2025Updated 7 months ago
- Imperial Chemistry department's introduction to programming using Python☆10Jun 7, 2025Updated 9 months ago