Maarten-vd-Sande / qnormLinks
Fast-ish (and correct!) quantile normalization in Python.
☆31Updated 4 months ago
Alternatives and similar repositories for qnorm
Users that are interested in qnorm are comparing it to the libraries listed below
Sorting:
- Normalization of RNA-seq gene expression☆101Updated 3 months ago
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆84Updated 4 years ago
- Porting DESeq2 into python via rpy2☆68Updated 2 years ago
- This repository hosts a minimal version of a Python API for BPNet.☆52Updated this week
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆85Updated last month
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆95Updated last year
- Tools for making plots of genomic datasets in a genome-browser-like format☆32Updated 10 months ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 6 months ago
- A simple pythonic interface to biomart.☆56Updated 5 years ago
- sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale☆93Updated 7 months ago
- Notes on single-cell Hi-C technologies, tools, and data☆84Updated last year
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆37Updated last year
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- machine-readable file format for genomic library sequence and structure☆123Updated last month
- A Python implementation of edgeR for differential expression analysis☆103Updated 6 years ago
- Updated DANPOS2 to work with python3☆22Updated last year
- liftover for python, made fast with cython☆90Updated last week
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆181Updated last month
- code to run sei and obtain sei and sequence class predictions☆109Updated 2 years ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Updated 11 months ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆70Updated 10 months ago
- A network-based approach for exon set enrichment☆15Updated 3 months ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆70Updated 2 years ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆54Updated 5 months ago
- ☆56Updated 5 months ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆120Updated 3 weeks ago
- Lightweight converter between hic and cool contact matrices.☆74Updated last year
- Tools for working with BUS files☆102Updated 4 months ago
- Python biomart API☆69Updated 2 years ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆80Updated last year