Maarten-vd-Sande / qnormLinks
Fast-ish (and correct!) quantile normalization in Python.
☆31Updated 6 months ago
Alternatives and similar repositories for qnorm
Users that are interested in qnorm are comparing it to the libraries listed below
Sorting:
- Normalization of RNA-seq gene expression☆101Updated 4 months ago
- Porting DESeq2 into python via rpy2☆68Updated 2 years ago
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆96Updated last year
- Tools for making plots of genomic datasets in a genome-browser-like format☆32Updated last year
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆84Updated 4 years ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆86Updated 2 months ago
- This repository hosts a minimal version of a Python API for BPNet.☆53Updated last month
- machine-readable file format for genomic library sequence and structure☆125Updated 3 months ago
- Updated DANPOS2 to work with python3☆23Updated last year
- Parsing tools for GTF (gene transfer format) files☆122Updated 9 months ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆70Updated last year
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 8 months ago
- A simple pythonic interface to biomart.☆57Updated 5 years ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆71Updated 2 years ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆122Updated 2 months ago
- code to run sei and obtain sei and sequence class predictions☆109Updated 2 years ago
- A network-based approach for exon set enrichment☆15Updated 4 months ago
- liftover for python, made fast with cython☆93Updated last month
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆112Updated last month
- ☆58Updated 6 months ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Updated last year
- Multi-omics factor analysis v2☆54Updated last month
- Python biomart API☆69Updated 2 years ago
- A Python implementation of edgeR for differential expression analysis☆104Updated 6 years ago
- Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)☆19Updated 4 years ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆57Updated 6 months ago
- A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction☆97Updated last week
- Tools for working with BUS files☆102Updated 6 months ago
- ☆26Updated 7 months ago