Single cell ANANSE Gene-regulatory-network analysis from Seurat objects
☆11Nov 12, 2023Updated 2 years ago
Alternatives and similar repositories for AnanseSeurat
Users that are interested in AnanseSeurat are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast-ish (and correct!) quantile normalization in Python.☆31Jun 5, 2025Updated 11 months ago
- Single Cell Epigenome-based Inference of Activity☆19Sep 27, 2023Updated 2 years ago
- Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workf…☆169Feb 24, 2026Updated 3 months ago
- ☆11May 30, 2023Updated 2 years ago
- A Nextflow pipeline for genome and pan-genome annotation☆16Feb 22, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆12Nov 20, 2023Updated 2 years ago
- NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)☆11Mar 2, 2023Updated 3 years ago
- ☆13Sep 4, 2025Updated 8 months ago
- Tools for assessing clustering robustness☆32Apr 2, 2026Updated last month
- Codes to run deltaSVM models to predict allelic TF binding☆11Apr 5, 2021Updated 5 years ago
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆15Feb 6, 2026Updated 3 months ago
- ☆31Apr 9, 2022Updated 4 years ago
- Haplotype-aware assembly of complex regions and small genomes☆15Updated this week
- rMETL - realignment-based Mobile Element insertion detection Tool for Long read☆21Aug 13, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Bioinformatic approach to identify functional transcription factor binding motifs☆11May 16, 2022Updated 4 years ago
- genes and genomes at your fingertips☆412Mar 5, 2026Updated 2 months ago
- Central repository for PhyloPic☆29Apr 17, 2026Updated last month
- JBrowse 2 plugin for editing annotations on an Apollo server☆15Updated this week
- ActiveDriverDB☆12May 1, 2023Updated 3 years ago
- Code and data used to create the JASPAR UCSC Genome Browser tracks data hub☆18Dec 11, 2025Updated 5 months ago
- Bioconductor components for general cancer genomics☆11Feb 5, 2023Updated 3 years ago
- Add functional variant annotation to MAF file☆11Nov 20, 2024Updated last year
- Web app for automated, systematic, and integrated RNA-seq differential expression analysis☆15May 1, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Repository of "Personalization of Logical Models With Multi-Omics Data Allows Clinical Stratification of Patients" paper☆11Dec 2, 2025Updated 5 months ago
- Generate the UMI count matrix from CEL-Seq2 sequencing data☆19Oct 12, 2018Updated 7 years ago
- Implementation of the cellular Potts model in pure javascript for fun an easy visualisation.☆11Mar 7, 2019Updated 7 years ago
- SHOOT.bio - the phylogenetic search engine☆27Jun 1, 2023Updated 2 years ago
- Repository of the pipeline of computational methods for logical modelling of biological networks that are deregulated in diseases, develo…☆10Mar 14, 2026Updated 2 months ago
- Designer scaffolded DNA DX-based wireframe lattices☆14Jul 28, 2018Updated 7 years ago
- Alternative, underscore syntax for anonymous functions in Julia☆16Apr 9, 2021Updated 5 years ago
- Multi-objective optimization in R☆12May 13, 2026Updated 2 weeks ago
- ☆10Jul 21, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Deep learning the cis-regulatory code for gene expression in selected model plants☆23Mar 15, 2024Updated 2 years ago
- ☆10Sep 20, 2022Updated 3 years ago
- ChromBERT: A pre-trained foundation model for context-specific transcription regulatory network☆22Mar 24, 2026Updated 2 months ago
- scDoRI (single-cell Deep multi-Omic Regulatory Inference) is a deep learning model to infer enhancer-mediated gene regulatory networks (e…☆31Aug 20, 2025Updated 9 months ago
- "Independent Component Analysis of BIg Omics Data"☆13Nov 3, 2022Updated 3 years ago
- Tutorial for using the perturbseq library to load and manipulate experiments☆24Aug 7, 2019Updated 6 years ago
- Agenda and materials for R-Ladies NL book-club☆41Sep 12, 2022Updated 3 years ago