☆142Nov 13, 2025Updated 3 months ago
Alternatives and similar repositories for CellForge
Users that are interested in CellForge are comparing it to the libraries listed below
Sorting:
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆522Updated this week
- ☆16Jan 26, 2024Updated 2 years ago
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆25Oct 3, 2023Updated 2 years ago
- ☆19Jul 8, 2021Updated 4 years ago
- Spatial Tumor Microenvironment (SpatialTME) database is a comprehensive database designed for characterize tumor spatial microenvironment…☆12Dec 4, 2023Updated 2 years ago
- a simple R data package for curated cancer pathway-specific gene lists☆13Mar 31, 2020Updated 5 years ago
- Official InfiniBench: A Benchmark for Large Multi-Modal Models in Long-Form Movies and TV Shows☆19Nov 4, 2025Updated 3 months ago
- Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.☆10May 31, 2024Updated last year
- ☆41Sep 23, 2025Updated 5 months ago
- ☆13Jun 18, 2018Updated 7 years ago
- Course: DD2412 Deep Learning Advanced at KTH Project by Casper, Magnus, and Friso Focus: Self-supervised learning and computer vision wit…☆11Dec 15, 2023Updated 2 years ago
- The code for NeurIPS 2023 paper DSR☆14Oct 8, 2023Updated 2 years ago
- Scripts associated with the 2023 Open Problems competition☆11Nov 23, 2023Updated 2 years ago
- FitDevo: accurate inference of single-cell developmental potential using sample-specific gene weight☆16Apr 7, 2024Updated last year
- Single-cell perturbation effects prediction benchmark☆66Jan 6, 2026Updated last month
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆163Jan 26, 2026Updated last month
- ☆97Aug 26, 2025Updated 6 months ago
- A repository for reproducing experiments from the TxPert paper☆25Jan 9, 2026Updated last month
- BC-Design: A Biochemistry-Aware Framework for High-Precision Inverse Protein Folding https://www.biorxiv.org/content/10.1101/2024.10.28.6…☆20Nov 24, 2025Updated 3 months ago
- Official implementation for the paper "Toward Scientific Reasoning in LLMs: Training from Expert Discussions via Reinforcement Learning"☆53Jun 4, 2025Updated 8 months ago
- A causal implicit generative model for simulating single-cell RNA-seq data guided by a gene regulatory network 🧬☆39Jul 28, 2025Updated 7 months ago
- PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…☆74Dec 13, 2024Updated last year
- Learning Single-Cell Perturbation Responses using Neural Optimal Transport☆159Oct 31, 2024Updated last year
- A Comprehensive Dataset for Advanced Image Generation and Editing}☆31Oct 2, 2025Updated 4 months ago
- PiFlow: Principle-aware Scientific Discovery with Multi-Agent Collaboration☆41Jan 7, 2026Updated last month
- STELLA: Self-Evolving LLM Agent for Biomedical Research☆74Feb 14, 2026Updated 2 weeks ago
- a light structured Residual autoencoder and mutual nearest neighbor Paring guided Adversarial Network for scRNA-seq batch correction☆15Jul 13, 2023Updated 2 years ago
- ☆33Updated this week
- Scripts from the GBM cellular states paper☆20Feb 24, 2021Updated 5 years ago
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆334Feb 1, 2025Updated last year
- Arc Virtual Cell Atlas☆499Feb 12, 2026Updated 2 weeks ago
- Official implementation of 'Structure-aware Interactive Graph Neural Networks for the Prediction of Protein-Ligand Binding Affinity' (KDD…☆39Dec 28, 2021Updated 4 years ago
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆47Dec 3, 2024Updated last year
- ☆145Apr 19, 2025Updated 10 months ago
- ☆27Jun 4, 2023Updated 2 years ago
- ☆29Apr 8, 2025Updated 10 months ago
- Chemist AI Agent for Developing Materials Datasets with Natural Language Prompts☆65Nov 13, 2024Updated last year
- ☆20May 7, 2024Updated last year
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆82Dec 3, 2025Updated 2 months ago