Alternatives and similar repositories for alphagenome

Users that are interested in alphagenome are comparing it to the libraries listed below

• google-deepmind / alphamissense
  ☆581Updated last year
• NVIDIA / bionemo-framework
  BioNeMo Framework: For building and adapting AI models in drug discovery at scale
  ☆479Updated this week
• bowang-lab / BioReason
  BioReason: Incentivizing Multimodal Biological Reasoning within a DNA-LLM Model
  ☆267Updated last month
• ArcInstitute / arc-virtual-cell-atlas
  Arc Virtual Cell Atlas
  ☆386Updated 3 months ago
• Zymrael / savanna
  Pretraining infrastructure for multi-hybrid AI model architectures
  ☆177Updated 3 weeks ago
• instadeepai / nucleotide-transformer
  Foundation Models for Genomics & Transcriptomics
  ☆673Updated 3 weeks ago
• ArcInstitute / state
  State is a machine learning model that predicts cellular perturbation response across diverse contexts
  ☆302Updated this week
• Genentech / gReLU
  gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.
  ☆269Updated last month
• MAGICS-LAB / DNABERT_2
  [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
  ☆403Updated 7 months ago
• kyegomez / Open-AF3
  Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
  ☆790Updated last week
• evo-design / evo
  Biological foundation modeling from molecular to genome scale
  ☆1,398Updated 5 months ago
• zou-group / virtual-lab
  A virtual lab of LLM agents for science research
  ☆334Updated last week
• Zymrael / vortex
  Inference and numerics for multi-hybrid AI model architectures
  ☆71Updated 2 weeks ago
• songlab-cal / gpn
  Genomic Pre-trained Network
  ☆273Updated 3 weeks ago
• vandijklab / cell2sentence
  Cell2Sentence: Teaching Large Language Models the Language of Biology
  ☆185Updated last month
• HazyResearch / hyena-dna
  Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena
  ☆705Updated 3 months ago
• biomap-research / scFoundation
  ☆348Updated 6 months ago
• microsoft / bioemu
  Inference code for scalable emulation of protein equilibrium ensembles with generative deep learning
  ☆562Updated this week
• LucaOne / LucaOne
  The resources of LucaOne, including: the model code, training scripts, embedding inference code, and trained checkpoints.
  ☆291Updated this week
• calico / basenji
  Sequential regulatory activity predictions with deep convolutional neural networks.
  ☆443Updated 2 months ago
• calico / borzoi
  RNA-seq prediction with deep convolutional neural networks.
  ☆185Updated last month
• yiqunchen / GenePT
  ☆276Updated last year
• JoshuaChou2018 / AutoBA
  An AI Agent for Fully Automated Multi-omic Analyses
  ☆189Updated 9 months ago
• steineggerlab / foldseek
  Foldseek enables fast and sensitive comparisons of large structure sets.
  ☆1,018Updated last week
• helicalAI / helical
  A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.
  ☆141Updated this week
• apeterswu / Awesome-Bio-Foundation-Models
  A collection of awesome bio-foundation models, including protein, RNA, DNA, gene, single-cell, and so on.
  ☆245Updated 2 months ago
• bowang-lab / scGPT
  ☆1,295Updated last month
• ml4bio / RNA-FM
  Nature Methods: RNA foundation model (together with RhoFold)
  ☆289Updated 2 months ago
• Ligo-Biosciences / AlphaFold3
  Open source implementation of AlphaFold3
  ☆996Updated 10 months ago
• amulya-prasad / XplainMD
  ☆42Updated 3 months ago