This API provides programmatic access to the AlphaGenome model developed by Google DeepMind.
☆1,773Mar 3, 2026Updated this week
Alternatives and similar repositories for alphagenome
Users that are interested in alphagenome are comparing it to the libraries listed below
Sorting:
- Genomic Pre-trained Network☆325Feb 24, 2026Updated last week
- Biological foundation modeling from molecular to genome scale☆1,479Feb 16, 2026Updated 2 weeks ago
- RNA-seq prediction with deep convolutional neural networks.☆227Aug 28, 2025Updated 6 months ago
- Genome modeling and design across all domains of life☆3,336Updated this week
- ☆45Feb 11, 2026Updated 3 weeks ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆97Nov 13, 2025Updated 3 months ago
- Foundation Models for Genomics & Transcriptomics☆830Feb 24, 2026Updated last week
- Machine learning methods for DNA sequence analysis.☆59Updated this week
- ☆1,481Nov 12, 2025Updated 3 months ago
- Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena☆764Apr 22, 2025Updated 10 months ago
- AlphaFold 3 inference pipeline.☆7,662Feb 25, 2026Updated last week
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆317Updated this week
- For fine-tuning Enformer using paired WGS & gene expression data☆27Aug 27, 2025Updated 6 months ago
- ☆617Mar 13, 2024Updated last year
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆89Dec 10, 2025Updated 2 months ago
- code to run sei and obtain sei and sequence class predictions☆111Dec 20, 2022Updated 3 years ago
- Arc Virtual Cell Atlas☆499Feb 12, 2026Updated 3 weeks ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,573Updated this week
- Sequential regulatory activity predictions with deep convolutional neural networks.☆466Jan 15, 2026Updated last month
- BioReason: Incentivizing Multimodal Biological Reasoning within a DNA-LLM Model | NeurIPS '25☆372Dec 22, 2025Updated 2 months ago
- This is the alpha version of the CellOracle package☆422Feb 3, 2026Updated last month
- deep learning-inspired explainable sequence model for transcription initiation☆102Mar 3, 2025Updated last year
- Scoring GT/AG sites for improving spliced alignment☆51Nov 10, 2025Updated 3 months ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Jan 22, 2025Updated last year
- Biological sequence analysis for the modern age.☆263Feb 22, 2026Updated last week
- ☆2,253Jan 26, 2026Updated last month
- Bi-Directional Equivariant Long-Range DNA Sequence Modeling☆226Jun 17, 2025Updated 8 months ago
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆129Oct 31, 2024Updated last year
- ☆36Feb 20, 2026Updated last week
- Official repository for the Boltz biomolecular interaction models☆3,799Oct 3, 2025Updated 5 months ago
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆3,986Feb 7, 2024Updated 2 years ago
- ☆91Nov 19, 2025Updated 3 months ago
- Tool for plotting sequencing data along genomic coordinates.☆336Dec 12, 2025Updated 2 months ago
- Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/☆290Jun 16, 2025Updated 8 months ago
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆526Feb 24, 2026Updated last week
- 🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨☆465Dec 22, 2025Updated 2 months ago
- Toward High-Accuracy Open-Source Biomolecular Structure Prediction.☆1,668Feb 25, 2026Updated last week
- ☆101Nov 6, 2025Updated 3 months ago
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)☆246Jan 31, 2026Updated last month