epigen / CellWhispererLinks
CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets
☆56Updated 7 months ago
Alternatives and similar repositories for CellWhisperer
Users that are interested in CellWhisperer are comparing it to the libraries listed below
Sorting:
- ☆76Updated this week
- Predict RNA velocity through deep learning☆69Updated last year
- Single cell omics biology annotations☆51Updated last month
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆38Updated last week
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated last year
- ☆38Updated last month
- Accelerated, Python-only, single-cell integration benchmarking metrics☆59Updated this week
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆95Updated 3 months ago
- End-to-end analysis of spatial multi-omics data☆75Updated 2 months ago
- Gene group activity utility functions for Scanpy☆76Updated 5 months ago
- single cell foundation model for Gene network inference and more☆81Updated this week
- Direct estimation of mean and covariance from single cell RNA seq experiments☆109Updated 3 weeks ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆68Updated last month
- R implementation of GeneTrajectory☆58Updated last year
- A tool for semi-automatic cell type harmonization and integration☆105Updated 2 months ago
- ☆58Updated 8 months ago
- A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.☆47Updated 4 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆74Updated 2 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆73Updated 4 months ago
- ☆42Updated 2 weeks ago
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆43Updated this week
- Python implementation of Milo for differential abundance testing on KNN graph☆68Updated 3 months ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆128Updated 3 months ago
- Molecular interactions inference from single-cell multi-omics data☆24Updated 2 weeks ago
- Multi-omic velocity inference☆110Updated 7 months ago
- Pipeline to run scE2G☆26Updated this week
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆114Updated last week
- Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).☆21Updated last month
- ☆106Updated this week
- ☆52Updated last year