CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets
☆208May 12, 2026Updated last month
Alternatives and similar repositories for CellWhisperer
Users that are interested in CellWhisperer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RNA-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.☆46Aug 5, 2025Updated 10 months ago
- A Snakemake workflow and MrBiomics module for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, p…☆77Jun 8, 2026Updated last week
- Workflow to Fetch Public Sequencing Data and Metadata Using iSeq and MrBiomics Module.☆46Jun 23, 2025Updated 11 months ago
- Ultimate ATAC-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.☆101Nov 25, 2025Updated 6 months ago
- PULSAR: a Foundation Model for Multi-scale and Multicellular Biology☆34Mar 1, 2026Updated 3 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A Snakemake workflow and MrBiomics module for easy visualization of genome browser tracks of aligned BAM files (e.g., RNA-seq, ATAC-seq, …☆57Aug 5, 2025Updated 10 months ago
- CeMM's Snakemake SLURM cluster profile☆50Oct 8, 2025Updated 8 months ago
- Analyzing chromatin accessibility data in R☆19Jun 23, 2023Updated 2 years ago
- Accessible and interoperable whole slide image analysis☆298Jun 3, 2026Updated last week
- A Snakemake workflow and MrBiomics module for performing perturbation analyses of pooled (multimodal) CRISPR screens with sc/snRNA-seq re…☆56Dec 7, 2025Updated 6 months ago
- ☆65Sep 13, 2024Updated last year
- ☆26May 26, 2026Updated 2 weeks ago
- A Snakemake workflow and MrBiomics module to split, filter, normalize, integrate and select highly variable features of count matrices re…☆54Jan 9, 2026Updated 5 months ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆41Aug 23, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- CHOIR : Clustering Hierarchy Optimization by Iterative Random forests (www.CHOIRclustering.com)☆92Apr 15, 2026Updated 2 months ago
- A general purpose Snakemake workflow and MrBiomics module to perform unsupervised analyses (dimensionality reduction & cluster analysis) …☆67May 18, 2026Updated 3 weeks ago
- A tool for semi-automatic cell type classification☆487May 22, 2026Updated 3 weeks ago
- 🏃 The go-to single-cell Foundation Model☆148May 20, 2026Updated 3 weeks ago
- Simulation and optimization of cell clusters.☆12Aug 25, 2025Updated 9 months ago
- ☆107Aug 26, 2025Updated 9 months ago
- Spatial One☆30Oct 31, 2024Updated last year
- A Snakemake workflow and MrBiomics module for processing and visualizing (multimodal) sc/snRNA-seq data generated with 10X Genomics Kits …☆59Jan 29, 2026Updated 4 months ago
- Ultrafast method to compute single-sample gene set enrichment scores for gene expression or proteomics data☆24May 2, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- cell type specific, trait-associated gene regulation☆30Mar 31, 2025Updated last year
- ☆61Feb 13, 2026Updated 4 months ago
- Interoperability between SpatialData and the Xenium Explorer☆26Jul 31, 2024Updated last year
- Single-cell dubious embedding detector (scDED): a statistical method for detecting dubious non-linear embeddings☆49May 14, 2025Updated last year
- Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R☆126Jun 4, 2026Updated last week
- Reference mapping for single-cell genomics☆405Mar 21, 2026Updated 2 months ago
- CELLama Project☆23Nov 15, 2025Updated 7 months ago
- Compound ranking predictions from gene expression signatures using ensemble neural network models.☆78Mar 23, 2026Updated 2 months ago
- A docker image for single-cell analysis☆108Apr 18, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆103May 20, 2026Updated 3 weeks ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆53Oct 31, 2024Updated last year
- Methods to discover gene programs on single-cell data☆191Jun 5, 2026Updated last week
- scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing and spatial dat…☆305Updated this week
- Aligning gene expression trajectories of single-cell reference and query systems☆88Aug 10, 2025Updated 10 months ago
- A permutation-free framework for scalable, robust, and reference-based cell-cell communication analysis in single cell transcriptomics st…☆23May 23, 2026Updated 3 weeks ago
- Pan-Cancer Single Cell Classifier☆87May 30, 2024Updated 2 years ago