richardmleggett / MARTiLinks
Metagenomic Analysis in Real Time
☆24Updated this week
Alternatives and similar repositories for MARTi
Users that are interested in MARTi are comparing it to the libraries listed below
Sorting:
- Predict plasmids from uncorrected long read data☆40Updated 5 years ago
- Recombination-free trees☆59Updated 4 months ago
- Split Kmer Analysis☆65Updated 3 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- Gene Absence Presence Identification tool.☆27Updated 4 months ago
- Order and orientation of complete bacterial genomes☆28Updated 3 weeks ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆49Updated 2 weeks ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆28Updated last year
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆30Updated 9 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆61Updated last week
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- Calculate assocations between genes and traits☆25Updated 4 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 5 months ago
- Long read metagenomics practical at EBAME18☆18Updated 6 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 2 weeks ago
- BEAV: Bacterial Element Annotation reVamped☆66Updated 9 months ago
- whole genome MLST analysis☆46Updated last month
- Gene-flank analysis tool☆28Updated 7 months ago
- A pipeline for bioinformatics analysis of bacterial genomes☆30Updated last week
- Bacterial GWAS analysis☆43Updated 2 weeks ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Updated 3 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- Automatic eukaryotic taxonomic classification☆29Updated 3 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆60Updated last month
- A tool for removing redundant genomes from a set of assemblies☆73Updated last year
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago