Python module to manipulate and visualize minimap2's cs tag
☆11Sep 2, 2026Updated this week
Alternatives and similar repositories for cstag
Users that are interested in cstag are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Sep 27, 2019Updated 6 years ago
- ☆14Mar 28, 2018Updated 8 years ago
- Bact-Builder: Microbial de novo genome assembly pipeline☆13Dec 5, 2022Updated 3 years ago
- General purpose tools for every-day sequencing bioinformatics. If you use any of these tools, please acknowledge this repository (there a…☆12Oct 13, 2020Updated 5 years ago
- Pan-genome Analysis☆12May 4, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Uses cDBG to count unitigs in bacterial populations☆19Feb 15, 2023Updated 3 years ago
- This VSCode extension helps you to manage entries on HatenaBlog and images on HatenaFotolife.☆12Updated this week
- 🔬 Genotyping tool for genome-edited samples using nanopore-targeted sequencing☆14May 22, 2026Updated 3 months ago
- Query sequence database by HMMs arranged in predefined synteny structure☆21Jun 23, 2026Updated 2 months ago
- Python3 wrapper for parallelized gene prediction using Prodigal☆11Mar 3, 2023Updated 3 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆26Jul 22, 2024Updated 2 years ago
- Systematic Analysis for Quantification of Expression☆13Jul 22, 2024Updated 2 years ago
- scripts for microbiome analysis☆12Jul 25, 2024Updated 2 years ago
- Within-species genome-wide dN/dS estimation from very many genomes☆24Oct 26, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Feb 15, 2019Updated 7 years ago
- Plot multiple sequence alignment (MSA)☆17Apr 21, 2026Updated 4 months ago
- Calculates both scaffold and contig statistics (N50, L50, etc.) from a scaffold FASTA file.☆14Sep 29, 2020Updated 5 years ago
- Rapid estimation of phylogenetic trees using sketching☆13Feb 18, 2025Updated last year
- Eterna100-V2 benchmarking results and scripts☆14Updated this week
- ☆16Jun 18, 2020Updated 6 years ago
- ☆11Aug 20, 2019Updated 7 years ago
- State of the art software for RNA sequence design. The first to solve the Eterna benchmark!☆16Jul 17, 2024Updated 2 years ago
- Workflow for MAG quality assessment and taxonomical annotation.☆15May 26, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Sep 24, 2024Updated last year
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Jun 17, 2022Updated 4 years ago
- ☆18Jun 5, 2026Updated 2 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆30Sep 21, 2024Updated last year
- RNAView identifies base pairs that are formed in nucleic acid structures and classifies them according to the system of Leontis and Westh…☆20Jul 11, 2024Updated 2 years ago
- Soccer Trajectory Prediction Competition☆16Aug 28, 2025Updated last year
- Inverted Repeats Finder: a program to analyze DNA and RNA sequences☆22Feb 21, 2025Updated last year
- ☆15Jun 30, 2021Updated 5 years ago
- Basic OpenMendel tutorials☆11Jul 24, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Rapid mining of RNA structure motifs from profiling data.☆15Oct 20, 2021Updated 4 years ago
- The BV-BRC Command Line Interface☆19Aug 6, 2025Updated last year
- extract MSAs from genome variation graphs☆34Mar 24, 2026Updated 5 months ago
- FunctionaL Omics Processing platform☆13Jul 25, 2024Updated 2 years ago
- gemsparcl 💎✨ Rapid and consistent clustering of millions of genomes highlights the diversity of prokaryotic life☆17Jun 16, 2026Updated 2 months ago
- Parallel solution for local RNA secondary structure analysis☆12Feb 14, 2023Updated 3 years ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆16Sep 11, 2020Updated 5 years ago