GATB / dsk
k-mer counting software
☆38Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for dsk
- ☆51Updated 3 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 4 years ago
- Edinburgh Genomics MinION training 2016☆34Updated 8 years ago
- Pan-Genomic Matching Statistics☆48Updated 7 months ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- Select primer sets for selective whole genome amplification (SWGA)☆32Updated 5 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆54Updated last year
- An efficient way to convert gff3 annotation files into EMBL format ready to submit.☆59Updated 8 months ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆27Updated 6 months ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- GATB Minia assembly pipeline☆29Updated last year
- Various scripts and recipes for working with nanopore data☆34Updated 8 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated last year
- Error correction for Oxford Nanopore data☆47Updated 3 years ago
- de Bruijn Workflow using Integral information of Short pair End reads☆13Updated 3 months ago
- Classifier for metagenomic sequences using FM-index with run-block compressed BWT.☆51Updated this week
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆70Updated last week
- ☆30Updated 6 months ago
- Visualize whole genome alignments as linear maps☆70Updated last month
- Using kallisto for metagenomic analysis☆50Updated 7 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆46Updated 3 years ago
- Manipulate FASTA files☆30Updated 10 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 7 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- ☆60Updated last month
- UCSC Nanopore☆43Updated 5 years ago
- Antibiotic resistance predictions in minutes on a laptop☆50Updated 5 years ago