Alternatives and similar repositories for unitig-counter

Users that are interested in unitig-counter are comparing it to the libraries listed below

• esteinig / sketchy
  Genomic neighbor typing of bacterial pathogens using MinHash
  ☆43Updated 2 years ago
• phiweger / ideel
  Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes
  ☆15Updated 7 years ago
• iqbal-lab-org / make_prg
  Code to create a PRG from a Multiple Sequence Alignment file
  ☆25Updated 3 months ago
• karel-brinda / Phylign
  Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)
  ☆39Updated last year
• farhat-lab / fast-lineage-caller
  ☆14Updated 4 years ago
• santeripuranen / SpydrPick
  SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.
  ☆15Updated 3 years ago
• SouthGreenPlatform / panache
  Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…
  ☆45Updated 2 years ago
• mjsull / chromatiblock
  Colinear block visualisation tool
  ☆31Updated last year
• dhelekal / CaveDive
  ☆18Updated last year
• iqbal-lab-org / varifier
  Variant call verification
  ☆16Updated 7 months ago
• chrisruis / MutTui
  MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets
  ☆32Updated last year
• bacpop / mandrake
  Mandrake 🌿/👨‍🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding
  ☆39Updated 9 months ago
• bluenote-1577 / floria
  Strain-level haplotyping for metagenomes with short or long-reads.
  ☆59Updated 8 months ago
• bacpop / unitig-caller
  Methods to determine sequence element (unitig) presence/absence
  ☆22Updated 3 weeks ago
• karel-brinda / attotree
  Rapid estimation of phylogenetic trees using sketching
  ☆13Updated 10 months ago
• phac-nml / neptune
  Neptune: Genomic Signature Discovery
  ☆20Updated last year
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆35Updated 7 months ago
• tlemane / kmdiff
  Differential k-mer analysis
  ☆39Updated last year
• bacpop / pp-sketchlib
  Library of sketching functions used by PopPUNK
  ☆31Updated 8 months ago
• nluhmann / BlastFrost
  ☆44Updated 4 years ago
• medvedevgroup / BubbZ
  ☆15Updated 5 years ago
• mbhall88 / lrge
  Genome size estimation from long read overlaps
  ☆77Updated 2 weeks ago
• zjshi / Maast
  Microbial agile accurate SNP Typer
  ☆29Updated last year
• kevsilva / StrainFLAIR
  Strain-level abundances estimation in metagenomic samples using variation graphs
  ☆24Updated 2 years ago
• AllTheBacteria / Phylign
  Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…
  ☆12Updated last year
• tseemann / scripts
  Miscellaneous Perl scripts from 20 years in microbial bioinformatics
  ☆17Updated last year
• aesheppard / TETyper
  transposable element typing pipeline
  ☆19Updated last year
• rchikhi / 2022-pangenome-graphs-intro
  ☆28Updated last year
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆24Updated last year
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆50Updated 3 years ago