Protein Annotation by Residue-Specific Enrichment: a site-based statistical method for interpretable protein function annotation
☆16Jun 16, 2025Updated last year
Alternatives and similar repositories for PARSE
Users that are interested in PARSE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Representation learning for protein functional site analysis☆17Aug 11, 2023Updated 2 years ago
- ProteomeLM: A proteome-scale language model allowing fast prediction of protein-protein interactions and gene essentiality across taxa☆36Jun 10, 2026Updated last month
- EnzyMM - Enzyme Motif Miner - Geometric matching of catalytic motifs in protein structures.☆41May 23, 2026Updated last month
- Transformer for protein function prediction (version 2)☆14Jun 5, 2026Updated last month
- Pipeline for exploring protein families using homology based or vector representation based methods to generate clusters in sequence spac…☆17Mar 6, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆77Sep 25, 2024Updated last year
- A package for making tree-based visualizations for embedding vectors☆10Feb 6, 2023Updated 3 years ago
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆63Apr 29, 2025Updated last year
- InterLabelGO+: Unraveling label correlations in protein function prediction☆16Aug 5, 2025Updated 11 months ago
- Library of models for Protein Function prediction (part of the 18th top solution out of 1625 teams in CAFA5)☆20May 23, 2025Updated last year
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆36Nov 18, 2023Updated 2 years ago
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆44Jun 28, 2021Updated 5 years ago
- a pipeline to cluster proteins into families☆10Apr 1, 2020Updated 6 years ago
- GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts☆36Apr 16, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆60Sep 11, 2024Updated last year
- ☆22Mar 6, 2024Updated 2 years ago
- LM-GVP: A Generalizable Deep Learning Framework for Protein Property Prediction from Sequence and Structure☆65Mar 4, 2024Updated 2 years ago
- Query sequence database by HMMs arranged in predefined synteny structure☆20Jun 23, 2026Updated 3 weeks ago
- ☆13Jul 14, 2023Updated 3 years ago
- DeepGO with Fuzzy DL☆34Sep 19, 2022Updated 3 years ago
- DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction☆35Jul 28, 2021Updated 4 years ago
- Highly accurate discovery of terpene synthases powered by machine learning☆17Jun 9, 2026Updated last month
- Pooling by PageRank Token Importance. This is a weighted average pooling method where the weights are derived from the internal attention…☆20Jun 11, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Metagenomics Pipeline Repository for January, 2015 NCBI/ADDS Hackathon at NIH☆10Oct 31, 2016Updated 9 years ago
- Molecular Descriptors with Actively Identified Subsets☆17Aug 25, 2025Updated 10 months ago
- Geometric Vector Perceptron --- a rotation-equivariant GNN for learning from biomolecular structure☆164May 1, 2021Updated 5 years ago
- Graph Learning of INTER-protein contacts☆10Feb 20, 2022Updated 4 years ago
- Conditional Variational Autoencoder for the prediction of site-specific recombinases selective for a specified target site☆12Jun 23, 2023Updated 3 years ago
- Conversion of PDBx/mmCIF files to best effort/minimal PDB files☆24Nov 1, 2024Updated last year
- Reaction SMILES-AA mapping via language modelling☆29Sep 11, 2024Updated last year
- The code and analyses accompanying the manuscript “MetaMap: An atlas of metatranscriptomic reads in human disease-related RNA-seq data”.☆12Nov 28, 2018Updated 7 years ago
- Real-time structure motif searching in protein 3D structures using an inverted index strategy☆16Jul 19, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆10Aug 29, 2012Updated 13 years ago
- Interpretable AI pipeline improving binding predictions for novel protein targets and ligands☆42May 6, 2024Updated 2 years ago
- This is the official repository of GCP-VQVAE: A Geometry-Complete Language for Protein 3D Structure☆43May 9, 2026Updated 2 months ago
- 基于Qwen2.5模型、使用DISC-Law-SFT-Pair数据集微调的法律大模型☆12Dec 29, 2024Updated last year
- ☆18Aug 28, 2023Updated 2 years ago
- ☆17May 7, 2026Updated 2 months ago
- ML-based molecular representation models using PyTorch☆16Feb 25, 2026Updated 4 months ago