Alternatives and similar repositories for Phyla

Users that are interested in Phyla are comparing it to the libraries listed below

• FunctionLab / tapioca
  a framework for predicting global protein-protein interaction networks from dynamic mass spec data
  ☆24Updated last year
• TattaBio / DGEB
  Diverse Genomic Embedding Benchmark
  ☆46Updated 5 months ago
• TattaBio / OMG
  ☆45Updated last year
• allydunham / sequence_unet
  Fully convolutional deep learning variant effect predictor architecture
  ☆23Updated last year
• songlab-cal / CPT
  Cross-protein transfer learning for variant effect prediction
  ☆20Updated last year
• evanseitz / squid-nn
  surrogate quantitative interpretability for deepnets
  ☆24Updated 3 weeks ago
• OATML / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆67Updated 2 years ago
• Llannelongue / B4PPI
  Benchmarking Pipeline for Prediction of Protein-Protein Interactions
  ☆13Updated 3 years ago
• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆37Updated 3 years ago
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆29Updated last year
• samsledje / philharmonic
  Decoding the functional networks of non-model organisms
  ☆11Updated last month
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆51Updated 2 months ago
• Genentech / regLM
  Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.
  ☆47Updated 10 months ago
• TattaBio / gLM2
  ☆72Updated 10 months ago
• mims-harvard / SPECTRA
  SPECTRA: Spectral framework for evaluation of biomedical AI models
  ☆40Updated 5 months ago
• kad-ecoli / python_scripts
  scripts for parsing PDB, fasta, and GO
  ☆16Updated 3 years ago
• ntranoslab / esm-variants
  ☆77Updated last year
• BioComputingUP / MobiDB-lite
  Long disorder consensus predictor
  ☆16Updated 5 months ago
• Sanofi-Public / RiboNN
  RiboNN: predicting translation efficiencies from mRNA sequences
  ☆32Updated last month
• YeoLab / HydRA
  ☆11Updated 6 months ago
• konstin / knn-for-homology
  Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"
  ☆13Updated 2 years ago
• autosome-ru / LegNet
  accurate prediction of promoter activity and variant effects from massive parallel reporter assays
  ☆39Updated last month
• Weeks-UNC / RNAvigate
  Very flexible tools for plotting and analyzing all kinds of RNA structure data
  ☆13Updated 2 months ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆44Updated 2 years ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆30Updated 2 years ago
• mhorlacher / rbpnet
  ☆18Updated last year
• ThomasCMcLean / LazyAF
  Code for LazyAF pipeline
  ☆20Updated last year
• Profluent-AI / CRISPR-Cas-Atlas
  An atlas of CRISPR-Cas systems from systematic genome mining
  ☆18Updated 3 weeks ago
• JinsenLi / deepDNAshape
  A method to predict DNA shape features considering farther flanking region.
  ☆35Updated 11 months ago
• tymor22 / protein-vec
  Repository for Protein-Vec, a protein embedding mixture of experts model
  ☆38Updated last year