maovshao / PLMAlignLinks
PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity
☆20Updated 7 months ago
Alternatives and similar repositories for PLMAlign
Users that are interested in PLMAlign are comparing it to the libraries listed below
Sorting:
- Fast protein domain structure embedding+search tool☆25Updated 2 months ago
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆73Updated 7 months ago
- Detection of remote homology by comparison of protein language model representations☆54Updated 7 months ago
- ColabFold protocol☆52Updated 9 months ago
- Protein discovery tool for mining in the Alphafold database based on the position of few amino acids.☆23Updated last month
- GTalign, high-performance protein structure alignment, superposition and search☆48Updated this week
- ☆22Updated 2 months ago
- ☆22Updated 2 years ago
- Python framework for doing ancestral sequence reconstruction☆39Updated last year
- A domain parser for Alphafold models☆39Updated last year
- ☆30Updated last year
- A tool for protein and protein complex structure prediction.☆29Updated last month
- Fast indexing and search of discontinuous motifs in protein structures☆62Updated last week
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- Evolutionary conservation estimation of residues or nucleotides☆46Updated 3 years ago
- ☆43Updated 10 months ago
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆65Updated 5 months ago
- Pipeline for protein-protein interaction prediction☆23Updated 3 years ago
- Machine learning prediction of enzyme optimum pH☆44Updated 3 months ago
- ☆37Updated 3 weeks ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆56Updated 4 months ago
- ☆68Updated 10 months ago
- Python package to manage protein structures and their annotations☆43Updated last year
- ☆30Updated last year
- ☆51Updated this week
- Next generation sequence parameter library for proteins☆34Updated 3 weeks ago
- Transmembrane proteins predicted through Language Model embeddings☆38Updated last week
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆39Updated 10 months ago
- A fast, alignment-free method for estimating sequence conservation using protein sequence embedding☆17Updated 2 years ago
- ☆26Updated last week