Alternatives and similar repositories for PLMAlign

Users that are interested in PLMAlign are comparing it to the libraries listed below

• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆25Updated 2 weeks ago
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆41Updated last year
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆55Updated 9 months ago
• vttresearch / ActSeek
  Protein discovery tool for mining in the Alphafold database based on the position of few amino acids.
  ☆25Updated 3 months ago
• KULL-Centre / _2022_functional-sites-cagiada
  ☆23Updated 2 years ago
• maovshao / PLMSearch
  PLMSearch enables accurate and fast homologous protein search with only sequences as input
  ☆73Updated last month
• minmarg / gtalign_alpha
  GTalign, high-performance protein structure alignment, superposition and search
  ☆50Updated last month
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆40Updated last year
• SNU-CSSB / RF2-Lite
  ☆30Updated last year
• steineggerlab / colabfold-protocol
  ColabFold protocol
  ☆53Updated 11 months ago
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆47Updated 3 years ago
• ewbell94 / PEPPI
  Pipeline for protein-protein interaction prediction
  ☆23Updated 3 years ago
• clairemcwhite / vcmsa
  ☆30Updated last year
• UCLOrengoGroup / cath-alphaflow
  ☆23Updated 4 months ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆90Updated last year
• JudeWells / chainsaw
  ☆43Updated last year
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆60Updated 6 months ago
• chayan7 / flashfold
  A tool for protein and protein complex structure prediction.
  ☆29Updated 3 months ago
• microsoft / protnote
  ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…
  ☆55Updated 5 months ago
• esbgkannan / kibby
  A fast, alignment-free method for estimating sequence conservation using protein sequence embedding
  ☆17Updated 2 years ago
• steineggerlab / mmseqs2-gpu-analysis
  ☆13Updated 4 months ago
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆60Updated 2 months ago
• althonos / mini3di
  A NumPy port of the foldseek code for encoding protein structures to 3di.
  ☆72Updated last month
• PDB-REDO / AlphaBridge
  ☆43Updated 2 weeks ago
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆33Updated last year
• romainstuder / evosite3d
  ☆21Updated last week
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆28Updated last year
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆45Updated 5 months ago
• kWeissenow / MutAmore
  Rendering protein mutation movies from predicted 3D structures
  ☆20Updated last year
• idptools / sparrow
  Next generation sequence parameter library for proteins
  ☆35Updated 3 weeks ago