PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity
☆21Sep 9, 2025Updated 10 months ago
Alternatives and similar repositories for PLMAlign
Users that are interested in PLMAlign are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆80Sep 9, 2025Updated 10 months ago
- Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape☆37Dec 8, 2025Updated 7 months ago
- ☆77Sep 25, 2024Updated last year
- A fast, alignment-free method for estimating sequence conservation using protein sequence embedding☆21Feb 6, 2023Updated 3 years ago
- ☆16May 7, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆125Jun 28, 2026Updated 3 weeks ago
- ☆21Jun 20, 2022Updated 4 years ago
- VenusFSFP: Few-Shot Protein Fitness Prediction☆119Nov 18, 2025Updated 8 months ago
- STRIDE: Species Tree Root Inference from Gene Duplication Events☆10Aug 28, 2018Updated 7 years ago
- ProTrek: illuminating the Protein Universe through Trimodal Protein Language Model (Connecting text and protein)☆210May 15, 2026Updated 2 months ago
- A powerful Perl module for simulating the genome digestions by restriction enzymes☆14Sep 10, 2024Updated last year
- CRISPR discovery pipeline☆33Nov 2, 2018Updated 7 years ago
- SE(3) diffusion models for generating CDR loops☆10Feb 6, 2024Updated 2 years ago
- This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-sho…☆368Jun 11, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆15Apr 3, 2025Updated last year
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆13Nov 14, 2025Updated 8 months ago
- Variant-aware CRISPR off-target nomination☆27Updated this week
- A Heterogeneous Graph Transformer (HGT)-based model for protein function prediction using biological knowledge graphs and protein languag…☆19Jan 27, 2026Updated 5 months ago
- Compute protein contact map from PDB file.☆12May 23, 2017Updated 9 years ago
- Protein language models-assisted optimization of a uracil-N-glycosylase variant enables programmable T-to-G and T-to-C base editing☆18Jun 6, 2024Updated 2 years ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆37Nov 5, 2025Updated 8 months ago
- Bi-Encoder approach for large-scale protein-peptide binding search☆13Jun 14, 2024Updated 2 years ago
- ☆33Aug 12, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- tool for dating gene age by micro- and macro-synteny with high speed and accuracy☆18Jan 3, 2026Updated 6 months ago
- TPepPro: a deep learning model for predicting peptide-protein interactions☆15Jun 25, 2024Updated 2 years ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Apr 29, 2025Updated last year
- Detection of remote homology by comparison of protein language model representations☆64Dec 16, 2024Updated last year
- Differentiable Pairing using Alignment-based Language Models☆27Jan 5, 2024Updated 2 years ago
- Learning and Aligning Large Protein Families with support of protein language models.☆32Updated this week
- Virus Protein Structural Analysis Toolkit☆14Sep 9, 2024Updated last year
- NanopolishComp is a Python3 package for downstream analyses of Nanopolish output files☆10Dec 22, 2020Updated 5 years ago
- Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)☆267Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Assort phage protein sequences into phamilies using MMseqs2☆12Dec 16, 2024Updated last year
- 🧬 Efficient parallelized peta-scale protein database search☆39Jan 4, 2024Updated 2 years ago
- ☆30Feb 6, 2026Updated 5 months ago
- Gene Family Annotation Workflow☆12Mar 26, 2024Updated 2 years ago
- ☆11Sep 16, 2021Updated 4 years ago
- PLM based active learning model for protein engineering☆86Aug 6, 2024Updated last year
- Complete saturation mutagenesis of a protein using ESM☆19Feb 20, 2024Updated 2 years ago