Alternatives and similar repositories for PLMAlign

Users that are interested in PLMAlign are comparing it to the libraries listed below

• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆38Updated last year
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆54Updated 7 months ago
• maovshao / PLMSearch
  PLMSearch enables accurate and fast homologous protein search with only sequences as input
  ☆73Updated 7 months ago
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆38Updated last year
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆21Updated last month
• steineggerlab / colabfold-protocol
  ColabFold protocol
  ☆52Updated 9 months ago
• minmarg / gtalign_alpha
  GTalign, high-performance protein structure alignment, superposition and search
  ☆46Updated 2 weeks ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆89Updated last year
• SNU-CSSB / RF2-Lite
  ☆30Updated last year
• steineggerlab / folddisco
  Fast indexing and search of discontinuous motifs in protein structures
  ☆52Updated this week
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆57Updated this week
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆45Updated 3 years ago
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆55Updated 3 months ago
• KULL-Centre / _2022_functional-sites-cagiada
  ☆22Updated 2 years ago
• JudeWells / chainsaw
  ☆41Updated 9 months ago
• UCLOrengoGroup / cath-alphaflow
  ☆22Updated last month
• ewbell94 / PEPPI
  Pipeline for protein-protein interaction prediction
  ☆23Updated 3 years ago
• vttresearch / ActSeek
  Protein discovery tool for mining in the Alphafold database based on the position of few amino acids.
  ☆22Updated last month
• chayan7 / flashfold
  A tool for protein and protein complex structure prediction.
  ☆29Updated last month
• tymor22 / tm-vec
  ☆68Updated 9 months ago
• althonos / mini3di
  A NumPy port of the foldseek code for encoding protein structures to 3di.
  ☆58Updated 4 months ago
• clairemcwhite / vcmsa
  ☆30Updated last year
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆44Updated 2 months ago
• jtrinquier / SoftAlign
  ☆26Updated 2 weeks ago
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆37Updated 2 months ago
• MPI-Dortmund / pymissense
  PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.
  ☆23Updated last year
• soedinglab / MMseqs2-App
  MMseqs2 app to run on your workstation or servers
  ☆87Updated this week
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆50Updated 3 months ago
• timkartar / DeepPBS
  Geometric deep learning of protein–DNA binding specificity
  ☆76Updated 3 months ago
• kWeissenow / MutAmore
  Rendering protein mutation movies from predicted 3D structures
  ☆20Updated last year