Alternatives and similar repositories for chumby

Users that are interested in chumby are comparing it to the libraries listed below

• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆27Updated 2 months ago
• ThomasCMcLean / LazyAF
  Code for LazyAF pipeline
  ☆21Updated last year
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆41Updated last year
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆29Updated 2 years ago
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆32Updated 2 years ago
• jnoms / vpSAT
  Virus Protein Structural Analysis Toolkit
  ☆14Updated last year
• esbgkannan / kibby
  A fast, alignment-free method for estimating sequence conservation using protein sequence embedding
  ☆17Updated 2 years ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆31Updated 2 years ago
• andyposbe / ColabFold-Pipeline-Toolkit
  The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.
  ☆16Updated last year
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆54Updated 3 years ago
• jurgjn / af-protein-universe
  Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…
  ☆27Updated 2 years ago
• andrewguy / biostructmap
  A Python package for mapping sequence aligned data onto protein structures
  ☆36Updated 4 years ago
• samsledje / philharmonic
  Decoding the functional networks of non-model organisms
  ☆11Updated last week
• KULL-Centre / _2022_functional-sites-cagiada
  ☆23Updated 2 years ago
• konstin / knn-for-homology
  Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"
  ☆13Updated 2 years ago
• romainstuder / evosite3d
  ☆21Updated 2 months ago
• kWeissenow / MutAmore
  Rendering protein mutation movies from predicted 3D structures
  ☆20Updated 2 years ago
• Bitbol-Lab / Phylogeny-MSA-Transformer
  Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…
  ☆17Updated 10 months ago
• lehner-lab / DMS2structure
  Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019
  ☆19Updated 6 years ago
• BioComputingUP / MobiDB-lite
  Long disorder consensus predictor
  ☆17Updated 3 months ago
• Orpowell / alphafold-analyser
  A command line tool for rapid visualisation of AlphaFold2 and AlphaFold3 predictions.
  ☆14Updated last month
• hgbrian / biocolabs
  a collection of colabs useful for molecular biology
  ☆31Updated last year
• ramithuh / diff-evol-tree-search
  We introduce a differentiable approach to phylogenetic tree construction, optimizing tree and ancestral sequences in its original represe…
  ☆20Updated 2 years ago
• Santollan / Frankies
  Frankies Scalable, AI-Based Antibody Design Pipeline
  ☆17Updated 3 months ago
• Singh-Lab / DeMaSk
  Prediction of protein substitution impact using a directional substitution matrix and homolog alignments
  ☆12Updated 4 years ago
• JudeWells / chainsaw
  ☆44Updated last year
• Rcoppee / CONSTRUCT
  Finding patch of conserved amino acid sites in 3D structure
  ☆13Updated 7 months ago
• Protein-Sequence-Annotation / PSALM
  Protein Sequence Annotation with Language Models
  ☆25Updated 6 months ago
• maovshao / PLMAlign
  PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity
  ☆20Updated 3 months ago
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆52Updated last year