DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction
☆36Jul 28, 2021Updated 5 years ago
Alternatives and similar repositories for DeepGraphGO
Users that are interested in DeepGraphGO are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Transformer-based protein function Annotation with joint feature-Label Embedding☆38Dec 18, 2024Updated last year
- The implementation of paper "HPOFiller: identifying missing protein-phenotype associations by graph convolutional network".☆12Dec 24, 2020Updated 5 years ago
- DeepGO with GOPlus axioms☆104Oct 1, 2026Updated 3 weeks ago
- DeepGO with Fuzzy DL☆34Sep 19, 2022Updated 4 years ago
- Graph Learning of INTER-protein contacts☆11Feb 20, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- [ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding☆153Mar 10, 2025Updated last year
- ☆17Apr 1, 2023Updated 3 years ago
- ☆65Oct 1, 2026Updated 3 weeks ago
- ☆23Mar 6, 2024Updated 2 years ago
- Method for constructing embeddings of GO terms.☆14Nov 25, 2021Updated 4 years ago
- ☆57Aug 28, 2024Updated 2 years ago
- ☆18Jun 13, 2025Updated last year
- An official implementation of Protein Representation Learning via Knowledge Enhanced Primary Structure Reasoning☆28Jul 14, 2023Updated 3 years ago
- Feature map and function annotation of Proteins☆35Jun 13, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Function prediction using a deep ontology-aware classifier☆88Oct 1, 2026Updated 3 weeks ago
- ☆11Jul 25, 2024Updated 2 years ago
- PO2Vec: bidirectional partial-order embeddings encode the GO hierarchy, enabling one-shot extreme multi-label function classification.☆48Mar 17, 2025Updated last year
- ☆13Nov 12, 2021Updated 4 years ago
- [Briefings in Bioinformatics'20] Integrating multi-network topology for gene function prediction using deep neural networks☆14Sep 5, 2019Updated 7 years ago
- ☆12Nov 12, 2021Updated 4 years ago
- Deep functional residue identification☆354Mar 24, 2023Updated 3 years ago
- ☆25Sep 22, 2026Updated last month
- ML toolset for creating TED: The Encyclopedia of Domains☆29May 29, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆23Sep 14, 2023Updated 3 years ago
- A case study on Pfam dataset to classify protein families.☆32Oct 10, 2019Updated 7 years ago
- ☆76Sep 25, 2024Updated 2 years ago
- DeepECtransformer☆33Oct 20, 2023Updated 3 years ago
- Protein Annotation by Residue-Specific Enrichment: a site-based statistical method for interpretable protein function annotation☆16Jun 16, 2025Updated last year
- Sequence-based protein solubility prediction using multidimensional embedding☆13Apr 19, 2021Updated 5 years ago
- ☆17Nov 11, 2022Updated 3 years ago
- ☆13Oct 19, 2023Updated 3 years ago
- Code for reproducing results of "Unsupervised embeddings is all you need for protein function prediction"☆41Jul 6, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆16Feb 2, 2023Updated 3 years ago
- ☆14Sep 3, 2024Updated 2 years ago
- Transformer for protein function prediction☆34Oct 24, 2024Updated 2 years ago
- Transformer for protein function prediction (version 2)☆14Updated this week
- GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)☆330Jun 13, 2025Updated last year
- Protein-protein interacting site predictor using deep graph convolutional network☆11Jan 3, 2023Updated 3 years ago
- ☆50Dec 2, 2024Updated last year