DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction
☆35Jul 28, 2021Updated 4 years ago
Alternatives and similar repositories for DeepGraphGO
Users that are interested in DeepGraphGO are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Transformer-based protein function Annotation with joint feature-Label Embedding☆38Dec 18, 2024Updated last year
- The implementation of paper "HPOFiller: identifying missing protein-phenotype associations by graph convolutional network".☆12Dec 24, 2020Updated 5 years ago
- [ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding☆153Mar 10, 2025Updated last year
- ☆60Sep 11, 2024Updated last year
- Method for constructing embeddings of GO terms.☆14Nov 25, 2021Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- DeepGO with GOPlus axioms☆103Oct 23, 2025Updated 8 months ago
- ☆18Jun 13, 2025Updated last year
- ☆17Apr 1, 2023Updated 3 years ago
- DeepGO with Fuzzy DL☆34Sep 19, 2022Updated 3 years ago
- An official implementation of Protein Representation Learning via Knowledge Enhanced Primary Structure Reasoning☆28Jul 14, 2023Updated 2 years ago
- Fast and accurate protein function prediction from sequence through pretrained language model and homology-based label diffusion☆45Jul 27, 2024Updated last year
- ☆22Mar 6, 2024Updated 2 years ago
- ☆13Nov 12, 2021Updated 4 years ago
- Function prediction using a deep ontology-aware classifier☆87Nov 21, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Graph Learning of INTER-protein contacts☆10Feb 20, 2022Updated 4 years ago
- ☆25Nov 14, 2025Updated 7 months ago
- [Briefings in Bioinformatics'20] Integrating multi-network topology for gene function prediction using deep neural networks☆14Sep 5, 2019Updated 6 years ago
- ☆77Sep 25, 2024Updated last year
- A case study on Pfam dataset to classify protein families.☆32Oct 10, 2019Updated 6 years ago
- Transformer for protein function prediction (version 2)☆14Jun 5, 2026Updated 3 weeks ago
- Sequence-based protein solubility prediction using multidimensional embedding☆13Apr 19, 2021Updated 5 years ago
- Graph-based representation learning method for protein function prediction☆24Aug 25, 2025Updated 10 months ago
- S2F: protein function without experiments☆16Nov 24, 2025Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- PO2Vec: bidirectional partial-order embeddings encode the GO hierarchy, enabling one-shot extreme multi-label function classification.☆51Mar 17, 2025Updated last year
- ☆13Oct 19, 2023Updated 2 years ago
- ☆23Sep 14, 2023Updated 2 years ago
- The standalone version / cli-tool of SPOT-Contact-Single available for public use for research purposes.☆16Feb 1, 2024Updated 2 years ago
- Deep functional residue identification☆352Mar 24, 2023Updated 3 years ago
- ☆51Dec 2, 2024Updated last year
- Protein-protein interacting site predictor using deep graph convolutional network☆11Jan 3, 2023Updated 3 years ago
- Geometric Vector Perceptron --- a rotation-equivariant GNN for learning from biomolecular structure☆164May 1, 2021Updated 5 years ago
- catELMo: Context-Aware Amino Acid Embedding Advances Analysis of TCR-Epitope Interactions☆15Apr 10, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Insights into the inner workings of transformer models for protein function prediction☆14Feb 9, 2024Updated 2 years ago
- Codes and models for the paper "Learning Unknown from Correlations: Graph Neural Network for Inter-novel-protein Interaction Prediction".☆82Feb 8, 2022Updated 4 years ago
- Precision-Recall based assessment for CAFA☆15Dec 6, 2019Updated 6 years ago
- SGPPI: structure-aware prediction of protein-protein interactions in rigorous conditions with graph convolutional network☆15Nov 17, 2022Updated 3 years ago
- DeepECtransformer☆31Oct 20, 2023Updated 2 years ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆41Aug 29, 2025Updated 10 months ago
- UPDATE: All future changes will be pushed to https://github.com/HICAI-ZJU/PromptProtein☆15Apr 23, 2023Updated 3 years ago