Ultra-fast in-silico structure mutation
☆37Apr 9, 2025Updated last year
Alternatives and similar repositories for EMBER3D
Users that are interested in EMBER3D are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Nov 10, 2023Updated 2 years ago
- ☆10Apr 1, 2022Updated 4 years ago
- ☆11Aug 3, 2023Updated 2 years ago
- ☆110Nov 28, 2023Updated 2 years ago
- Structure-conditioned masked language modeling for protein sequence design☆73Jan 31, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Generative diverse protein backbones by protein language model☆34Feb 27, 2026Updated last month
- ProtT5 (Transformer) embeddings used for residue wise disorder prediction in proteins☆11Mar 11, 2024Updated 2 years ago
- Benchmarking Pipeline for Prediction of Protein-Protein Interactions☆14Feb 7, 2022Updated 4 years ago
- Display PackedPose objects, Pose objects, or PDB files within a Jupyter notebook and Google Colab☆11Oct 16, 2022Updated 3 years ago
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆24Sep 18, 2023Updated 2 years ago
- A collection of *fold* tools☆304Aug 8, 2025Updated 8 months ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆72Aug 26, 2024Updated last year
- ☆18Oct 30, 2023Updated 2 years ago
- SLIP is a sandbox environment for engineering protein sequences with synthetic fitness functions.☆21Jan 17, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A series of scripts that facilitate the prediction of user-defined protein structural properties using AlphaFold2☆11Aug 28, 2023Updated 2 years ago
- A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2☆98Aug 29, 2023Updated 2 years ago
- Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…☆56Apr 10, 2025Updated last year
- ☆10Feb 3, 2026Updated 2 months ago
- Code for our paper "Protein sequence design with a learned potential"☆34Aug 5, 2021Updated 4 years ago
- ☆20Oct 4, 2022Updated 3 years ago
- ☆45Jan 10, 2024Updated 2 years ago
- Some scripts that I keep using over and over.☆21Jul 5, 2025Updated 9 months ago
- ☆18Mar 13, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆75Sep 25, 2024Updated last year
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated last year
- ☆118Dec 7, 2022Updated 3 years ago
- ☆12Dec 2, 2024Updated last year
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆181Oct 7, 2025Updated 6 months ago
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆39Jul 25, 2024Updated last year
- ☆137Jun 3, 2025Updated 10 months ago
- Code for our paper "Protein sequence design with a learned potential"☆83Sep 8, 2023Updated 2 years ago
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Oct 27, 2021Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆42Jul 9, 2023Updated 2 years ago
- ☆92Sep 7, 2022Updated 3 years ago
- Protein hallucination and inpainting with RoseTTAFold☆281Mar 30, 2023Updated 3 years ago
- ☆28Dec 6, 2022Updated 3 years ago
- Aligning protein generative models with experimental fitness☆120Mar 12, 2026Updated last month
- ☆37Jan 15, 2023Updated 3 years ago
- ☆11Apr 25, 2021Updated 4 years ago