Alternatives and similar repositories for EMBER3D

Users that are interested in EMBER3D are comparing it to the libraries listed below

• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆46Updated 8 months ago
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆72Updated 2 months ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆78Updated 3 months ago
• StatPhysBio / protein_holography
  Code for holographic machine learning of proteins
  ☆24Updated last year
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆63Updated 4 months ago
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆72Updated last year
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆117Updated 6 months ago
• hefeda / PGP
  ☆41Updated 5 months ago
• gitter-lab / metl
  Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models
  ☆60Updated last week
• ranganathanlab / bmDCA
  Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).
  ☆35Updated 5 years ago
• KULL-Centre / _2024_cagiada_stability
  ☆74Updated 10 months ago
• SNU-CSSB / RF2-Lite
  ☆33Updated last year
• flyark / AFM-LIS
  Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)…
  ☆63Updated 3 months ago
• AbSciBio / igdesign
  ☆47Updated last year
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆56Updated 5 months ago
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆40Updated last year
• hesther / enzymemap
  Python package to atom map, correct and suggest enzymatic reactions
  ☆42Updated last year
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆29Updated 7 months ago
• the-protein-engineering-tournament / pet-pilot-2023
  Results and data from the pilot round of the Protein Engineering Tournament
  ☆30Updated 10 months ago
• oxpig / ABlooper
  Tool for modelling the CDRs of antibodies
  ☆50Updated 3 years ago
• JudeWells / chainsaw
  ☆47Updated last year
• bwicky / oligomer_hallucination
  ☆37Updated 2 years ago
• labstructbioinf / localpdb
  Python package to manage protein structures and their annotations
  ☆45Updated last year
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆34Updated 2 years ago
• ievapudz / TemStaPro
  TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.
  ☆72Updated last year
• anton-bushuiev / ProteinTTT
  One protein is all you need (ICLR 2026)
  ☆67Updated last month
• dina-lab3D / CombFold
  ☆91Updated last year
• jonfunk21 / ProteusAI
  ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…
  ☆76Updated 5 months ago
• Furman-Lab / PatchMAN
  ☆27Updated last month
• Exscientia / abodybuilder3
  ☆74Updated last year