MattMcPartlon / AttnPacker
Code and Pre-Trained Models for "AttnPacker: An end-to-end deep learning method for protein side-chain packing"
☆84Updated last year
Alternatives and similar repositories for AttnPacker
Users that are interested in AttnPacker are comparing it to the libraries listed below
Sorting:
- Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing☆86Updated last year
- Official repository for DiffPepBuilder and DiffPepDock tools☆90Updated this week
- Structure-conditioned masked language modeling for protein sequence design☆62Updated last year
- ☆92Updated 6 months ago
- ☆103Updated 2 years ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆55Updated 3 weeks ago
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆94Updated 9 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆59Updated last year
- [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design☆71Updated last week
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆75Updated last year
- Sidechain conditioning and modeling for full-atom protein sequence design☆101Updated 2 months ago
- Official repo of "CarsiDock: a deep learning paradigm for accurate protein–ligand docking and screening based on large-scale pre-training…☆87Updated last month
- ☆88Updated 7 months ago
- DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.☆43Updated 2 months ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆42Updated 5 months ago
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆42Updated 5 months ago
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆115Updated this week
- Official repository of EnzymeFlow☆90Updated 5 months ago
- FlexPose, a framework for AI-based flexible modeling of protein-ligand binding pose.☆54Updated last year
- ☆40Updated last year
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆75Updated 10 months ago
- Multi-domain Distribution Learning for De Novo Drug Design☆83Updated last month
- A geometric flow matching model for generative protein-ligand docking and affinity prediction. (ISMB 2025)☆89Updated last month
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆44Updated 4 months ago
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆72Updated 7 months ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆57Updated 3 months ago
- Pro-FSFP: Few-Shot Protein Fitness Prediction☆82Updated this week
- Scripts to run AlphaFold3, Boltz-1 and Chai-1 with MMseqs2 MSAs and custom templates.☆70Updated this week
- ☆65Updated 3 months ago
- ☆65Updated last year