MattMcPartlon / AttnPackerLinks
Code and Pre-Trained Models for "AttnPacker: An end-to-end deep learning method for protein side-chain packing"
☆85Updated last year
Alternatives and similar repositories for AttnPacker
Users that are interested in AttnPacker are comparing it to the libraries listed below
Sorting:
- [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design☆73Updated 2 months ago
- Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing☆88Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆64Updated last year
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆77Updated last year
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆60Updated last month
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Updated 11 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated last year
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆36Updated last year
- ☆91Updated 9 months ago
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆43Updated 7 months ago
- ☆109Updated 2 years ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆79Updated last year
- Official repository of EnzymeFlow☆91Updated 7 months ago
- ☆100Updated last month
- Sidechain conditioning and modeling for full-atom protein sequence design☆110Updated 3 weeks ago
- ☆65Updated last year
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆83Updated last month
- Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”☆37Updated 4 months ago
- Open source code for AlphaFold.☆39Updated 2 years ago
- ☆70Updated 5 months ago
- Public Release of ProGen3 family of Models☆76Updated 2 months ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆61Updated last month
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆131Updated 2 weeks ago
- ☆40Updated last year
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆113Updated 4 months ago
- FlexPose, a framework for AI-based flexible modeling of protein-ligand binding pose.☆53Updated last year
- Official repository for DiffPepBuilder and DiffPepDock tools☆93Updated 3 weeks ago
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆83Updated this week
- FABind: Fast and Accurate Protein-Ligand Binding (NeurIPS 2023)☆134Updated this week
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆44Updated 7 months ago