MattMcPartlon / AttnPacker
Code and Pre-Trained Models for "AttnPacker: An end-to-end deep learning method for protein side-chain packing"
☆78Updated 10 months ago
Related projects ⓘ
Alternatives and complementary repositories for AttnPacker
- Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing☆74Updated 11 months ago
- Structure-conditioned masked language modeling for protein sequence design☆58Updated 9 months ago
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆52Updated 4 months ago
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆84Updated 3 months ago
- ☆95Updated last year
- ☆75Updated 3 weeks ago
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆47Updated last month
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆65Updated 8 months ago
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆44Updated 2 weeks ago
- ☆66Updated last year
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆31Updated this week
- Codes for our paper "Full-Atom Peptide Design with Geometric Latent Diffusion" (NeurIPS 2024)☆21Updated 2 weeks ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆51Updated last year
- Official repo of "CarsiDock: a deep learning paradigm for accurate protein–ligand docking and screening based on large-scale pre-training…☆70Updated 3 months ago
- Comprehensive benchmarking of protein-ligand structure generation methods (ICML 2024 AI4Science)☆79Updated this week
- Official repository for Target-Specific De Novo Peptide Binder Design with DiffPepBuilder☆59Updated last month
- ☆65Updated 2 weeks ago
- ☆62Updated last year
- Open source code for AlphaFold.☆37Updated last year
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆122Updated 2 months ago
- Geometric deep learning method to predict protein binding interfaces from a protein structure.☆108Updated last year
- Official repository of EnzymeFlow☆52Updated 2 weeks ago
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆93Updated this week
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆93Updated 6 months ago
- ☆77Updated 8 months ago
- FlexPose, a framework for AI-based flexible modeling of protein-ligand binding pose.☆48Updated 10 months ago
- Aligning protein generative models with experimental fitness☆68Updated 3 weeks ago
- Code for ProSST: A Pre-trained Protein Sequence and Structure Transformer with Disentangled Attention.☆39Updated 2 weeks ago
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆87Updated last year
- This repository implements Gibbs sampling with Graph-based Smoothing☆34Updated 5 months ago