A fast, alignment-free method for estimating sequence conservation using protein sequence embedding
☆20Feb 6, 2023Updated 3 years ago
Alternatives and similar repositories for kibby
Users that are interested in kibby are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆22Jun 10, 2024Updated 2 years ago
- Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…☆17Jan 17, 2025Updated last year
- neuropeptide prediction☆15Sep 2, 2022Updated 3 years ago
- Mol* as anywidget☆53Oct 13, 2025Updated 8 months ago
- ☆11Sep 17, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- code for IDR binding paper 2025☆74Feb 15, 2025Updated last year
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆41Jun 8, 2023Updated 3 years ago
- PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity☆20Sep 9, 2025Updated 9 months ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Oct 27, 2020Updated 5 years ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆103Apr 24, 2024Updated 2 years ago
- Minhash Index Extended to Knead Kmer Intersection☆11Mar 18, 2020Updated 6 years ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆117Feb 19, 2026Updated 4 months ago
- Generated color schemes for sequence alignment visualizations☆18Jul 20, 2022Updated 3 years ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆41Aug 29, 2025Updated 10 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A package for making tree-based visualizations for embedding vectors☆10Feb 6, 2023Updated 3 years ago
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated 2 years ago
- Biological prediction models made simple.☆50Updated this week
- Code for the paper "OneProt: Towards Multi-Modal Protein Foundation Models"☆23Oct 31, 2025Updated 7 months ago
- Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"☆13Apr 2, 2023Updated 3 years ago
- ClinVar Mapping and Annotation Toolkit☆20Jun 19, 2026Updated last week
- ☆15Aug 13, 2023Updated 2 years ago
- Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information☆33Jan 22, 2026Updated 5 months ago
- Semantic Segmentor for Protein Structures.☆11Dec 20, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Mechanical Turk on your own machine for chemical literature annotation☆13Feb 17, 2022Updated 4 years ago
- Ligand-binding site classification with deep graph neural networks.☆10Sep 24, 2023Updated 2 years ago
- 2D portraits of 3D protein structures☆27May 14, 2026Updated last month
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Jan 24, 2024Updated 2 years ago
- Emending Alignment of Spliced Transcript Reads☆12Jan 19, 2026Updated 5 months ago
- some tools for working with protein (PDB) files in tensorflow☆11Jul 9, 2019Updated 6 years ago
- Python package for handling ModelCIF mmCIF and BinaryCIF files☆14Updated this week
- Graph Attention Site Prediction (GrASP): Identifying Druggable Binding Sites Using Graph Neural Networks with Attention☆63Mar 3, 2026Updated 3 months ago
- 整理自己每天汲取到的知识并分享给大家☆14May 26, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆30Aug 9, 2023Updated 2 years ago
- Ligand binding site prediction and virtual screening☆12Oct 26, 2018Updated 7 years ago
- NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.☆33May 2, 2024Updated 2 years ago
- This is the official repository of Prot2Token paper.☆38Jun 6, 2025Updated last year
- A program fror inter-protein contact prediction from structures of interacting proteins☆21Jun 1, 2024Updated 2 years ago
- using shallow neural network layer (embedding) to infer gene-gene/sample relationship from gene expression data☆21Nov 16, 2018Updated 7 years ago
- ELECTOR: EvaLuator of Error Correction Tools for lOng Reads☆15May 27, 2021Updated 5 years ago