Alternatives and similar repositories for kibby

Users that are interested in kibby are comparing it to the libraries listed below

• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆26Updated last month
• KULL-Centre / _2022_functional-sites-cagiada
  ☆23Updated 2 years ago
• BioComputingUP / MobiDB-lite
  Long disorder consensus predictor
  ☆17Updated last month
• jurgjn / af-protein-universe
  Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…
  ☆27Updated 2 years ago
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆30Updated 2 years ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆31Updated 2 years ago
• ThomasCMcLean / LazyAF
  Code for LazyAF pipeline
  ☆21Updated last year
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆51Updated 3 years ago
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆56Updated 10 months ago
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆28Updated 2 years ago
• vttresearch / ActSeek
  Protein discovery tool for mining in the Alphafold database based on the position of few amino acids.
  ☆28Updated 2 weeks ago
• Bitbol-Lab / Phylogeny-MSA-Transformer
  Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…
  ☆17Updated 9 months ago
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆41Updated last year
• clairemcwhite / vcmsa
  ☆30Updated 2 years ago
• kWeissenow / MutAmore
  Rendering protein mutation movies from predicted 3D structures
  ☆20Updated last year
• romainstuder / evosite3d
  ☆21Updated 3 weeks ago
• esbgkannan / chumby
  A package for making tree-based visualizations for embedding vectors
  ☆10Updated 2 years ago
• maovshao / PLMAlign
  PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity
  ☆20Updated last month
• steineggerlab / colabfold-protocol
  ColabFold protocol
  ☆55Updated last year
• tymor22 / protein-vec
  Repository for Protein-Vec, a protein embedding mixture of experts model
  ☆38Updated last year
• walterlab-HMS / SPOC
  Code repository for the SPOC tool for scoring binary AF-M predicitons.
  ☆14Updated 6 months ago
• wallnerlab / ProQDock
  ProQDock is a Protein-Protein docking scoring program that uses high level coordinate driven features compiled and trained by a Support V…
  ☆11Updated 3 years ago
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆60Updated 6 months ago
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆33Updated last year
• Rcoppee / CONSTRUCT
  Finding patch of conserved amino acid sites in 3D structure
  ☆12Updated 6 months ago
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆41Updated last year
• lehner-lab / DMS2structure
  Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019
  ☆17Updated 6 years ago
• JudeWells / chainsaw
  ☆43Updated last year
• MIDIfactory / AlphaFastPPi
  Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
  ☆39Updated last year
• idptools / sparrow
  Next generation sequence parameter library for proteins
  ☆35Updated last month