Alternatives and similar repositories for DeCOIL

Users that are interested in DeCOIL are comparing it to the libraries listed below

• AIforGreatGood / biotransfer
  Machine learning-driven antibody design
  ☆56Updated last year
• epicrispr-biotechnologies / evolutionary_monte_carlo_search
  Implementation of Evolutionary and Metropolis Hastings Monte Carlo for text based (e.g. nucleotide/peptide) sequences
  ☆11Updated last year
• csi-greifflab / developability_profiling
  ☆21Updated 5 months ago
• luo-group / ConFit
  Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape
  ☆29Updated 9 months ago
• the-protein-engineering-tournament / pet-pilot-2023
  Results and data from the pilot round of the Protein Engineering Tournament
  ☆29Updated 2 months ago
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆27Updated last year
• oxpig / kasearch
  KA-Search: Rapid and exhaustive sequence identity search of known antibodies
  ☆22Updated 10 months ago
• kWeissenow / EMBER3D
  Ultra-fast in-silico structure mutation
  ☆33Updated last month
• swanss / FragFold
  Fragment binding prediction with ColabFold
  ☆34Updated 2 months ago
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆40Updated last month
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆49Updated 2 months ago
• VarunUllanat / mint
  Learning the language of protein-protein interactions
  ☆72Updated last week
• Kuhlman-Lab / alphafold3
  Kuhlman Lab Installation of AlphaFold3
  ☆26Updated 3 weeks ago
• AbSciBio / igdesign
  ☆40Updated 4 months ago
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆27Updated last year
• wells-wood-research / de-stress
  DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.
  ☆24Updated 3 months ago
• KULL-Centre / _2022_functional-sites-cagiada
  ☆22Updated last year
• PKUliujl / GeoSeqBuilder
  ☆27Updated 4 months ago
• tymor22 / protein-vec
  Repository for Protein-Vec, a protein embedding mixture of experts model
  ☆37Updated last year
• ivanjayapurna / low-n-protein-engineering
  A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …
  ☆27Updated 4 years ago
• petergroth / kermut
  This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …
  ☆25Updated 5 months ago
• csi-greifflab / manuscript_insilico_antibody_generation
  ☆24Updated 3 years ago
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆41Updated last month
• gitter-lab / metl
  Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models
  ☆36Updated this week
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆58Updated 4 years ago
• StatPhysBio / protein_holography
  Code for holographic machine learning of proteins
  ☆23Updated 7 months ago
• lcbc-epfl / metal-site-prediction
  ☆39Updated last year
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆56Updated 4 months ago
• brineylab / BALM-paper
  ☆17Updated 5 months ago
• JudeWells / chainsaw
  ☆39Updated 8 months ago