A computational method to optimize degenerate codons for synthesizing an informed combinatorial mutagenesis protein variant library
☆17Feb 18, 2025Updated last year
Alternatives and similar repositories for DeCOIL
Users that are interested in DeCOIL are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pretrained METL models with minimal dependencies☆16Sep 18, 2025Updated 9 months ago
- Implementation of Evolutionary and Metropolis Hastings Monte Carlo for text based (e.g. nucleotide/peptide) sequences☆13Mar 7, 2024Updated 2 years ago
- PLMFit platform for TL on PLMs☆21Aug 13, 2025Updated 10 months ago
- ☆30May 24, 2024Updated 2 years ago
- Python Toolbox For Rosetta Silent Files Processing☆10Aug 2, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Finding patch of conserved amino acid sites in 3D structure☆14Apr 13, 2025Updated last year
- Pipeline for Nanopore sequencing: demultiplexing, variant calling, and quality visualization with error handling.☆12May 10, 2026Updated last month
- Results and data from the pilot round of the Protein Engineering Tournament☆30Mar 25, 2025Updated last year
- Aligning protein generative models with experimental fitness☆122Mar 12, 2026Updated 3 months ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆83Oct 24, 2025Updated 7 months ago
- ProteinReDiff: Complex-based ligand-binding proteins redesign by equivariant diffusion-based generative models☆39Nov 25, 2024Updated last year
- ☆53Apr 22, 2026Updated last month
- BioReason-Pro: Advancing Protein Function Prediction with Multimodal Biological Reasoning☆117Jun 10, 2026Updated last week
- Generative diverse protein backbones by protein language model☆35Feb 27, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆31Dec 12, 2024Updated last year
- Fast, gene-specific joint humanisation of antibody heavy and light chains.☆23Nov 11, 2025Updated 7 months ago
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆29Jul 5, 2025Updated 11 months ago
- ☆74Feb 13, 2026Updated 4 months ago
- Steering discrete diffusion models with labeled data for protein fitness optimization☆29Nov 1, 2025Updated 7 months ago
- ☆15Sep 29, 2025Updated 8 months ago
- Protein representation and design under a single training scheme☆24May 17, 2026Updated last month
- Protein Design by Machine Learning guided Directed Evolution☆48Jan 1, 2026Updated 5 months ago
- ☆15Apr 3, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆18Dec 23, 2024Updated last year
- Inpainting protein sequence and structure☆12Nov 10, 2023Updated 2 years ago
- ☆32Feb 5, 2025Updated last year
- ☆11Feb 3, 2026Updated 4 months ago
- Implementation code for the paper "Aggregating Residue-Level Protein Language Model Embeddings with Optimal Transport"☆25May 3, 2025Updated last year
- ☆79Oct 27, 2021Updated 4 years ago
- Deep Learning Library and Benchmark for Protein Sequence Learning (Bioinformatics 2025)☆45Mar 30, 2026Updated 2 months ago
- Template-based protein design with Raygun☆82Apr 12, 2026Updated 2 months ago
- Making Protein Language Modeling Accessible to All Biologists☆165Jun 11, 2026Updated last week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Constant pH simulation with OpenMM☆20Mar 10, 2026Updated 3 months ago
- FeatureDock is a protein-ligand docking software guided by physicochemical feature-based local environment learning using Transformer☆41Oct 9, 2024Updated last year
- ☆23Jun 10, 2025Updated last year
- ☆18May 15, 2026Updated last month
- ☆85May 18, 2026Updated last month
- Cross-protein transfer learning for variant effect prediction☆21Sep 13, 2023Updated 2 years ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆101Jun 11, 2025Updated last year