jsunn-y / DeCOIL
A computational method to optimize degenerate codons for synthesizing an informed combinatorial mutagenesis protein variant library
☆14Updated 2 months ago
Alternatives and similar repositories for DeCOIL:
Users that are interested in DeCOIL are comparing it to the libraries listed below
- Machine learning-driven antibody design☆54Updated last year
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆22Updated 9 months ago
- ☆26Updated 2 months ago
- Results and data from the pilot round of the Protein Engineering Tournament☆28Updated 3 weeks ago
- Fragment binding prediction with ColabFold☆33Updated 3 weeks ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆36Updated 6 months ago
- ☆49Updated 3 weeks ago
- Tools for annotation, processing and ML for antibody sequences☆27Updated last month
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆27Updated last year
- Implementation of Evolutionary and Metropolis Hastings Monte Carlo for text based (e.g. nucleotide/peptide) sequences☆11Updated last year
- ☆37Updated 3 months ago
- Metrics for our protein design competitions.☆26Updated 5 months ago
- ☆38Updated 6 months ago
- An antibody-specific language model focusing on NGL prediction☆26Updated 7 months ago
- Kuhlman Lab Installation of AlphaFold3☆25Updated 3 weeks ago
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Updated 3 years ago
- ☆21Updated 3 months ago
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆27Updated last year
- Ultra-fast in-silico structure mutation☆32Updated last week
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆30Updated last month
- Code for humanization of antibody and nanobody☆39Updated 4 months ago
- ☆65Updated last month
- ☆45Updated 5 months ago
- Efficient manipulation of protein structures in Python☆53Updated 5 months ago
- ☆24Updated 3 years ago
- Protein Design by Machine Learning guided Directed Evolution☆37Updated 2 weeks ago
- ☆39Updated last year
- ☆45Updated last year
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆34Updated last week
- ☆38Updated last year