jsunn-y / DeCOIL
A computational method to optimize degenerate codons for synthesizing an informed combinatorial mutagenesis protein variant library
☆14Updated this week
Alternatives and similar repositories for DeCOIL:
Users that are interested in DeCOIL are comparing it to the libraries listed below
- Machine learning-driven antibody design☆54Updated last year
- ☆21Updated last month
- Fast deep learning methods for large-scale protein-protein interaction screening☆34Updated 4 months ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆22Updated 7 months ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆37Updated 3 months ago
- ☆30Updated last month
- ☆49Updated 8 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆57Updated 3 years ago
- Machine learning prediction of enzyme optimum pH☆29Updated 2 weeks ago
- ☆25Updated 2 weeks ago
- DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.☆21Updated 6 months ago
- Ultra-fast in-silico structure mutation☆32Updated 2 years ago
- Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…☆19Updated last year
- ☆61Updated 2 months ago
- ☆25Updated 8 months ago
- Inference code for Bio-Inspired Antibody Language Model☆23Updated 5 months ago
- Implementation of Evolutionary and Metropolis Hastings Monte Carlo for text based (e.g. nucleotide/peptide) sequences☆11Updated 11 months ago
- Code for holographic machine learning of proteins☆22Updated 3 months ago
- A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …☆26Updated 4 years ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆24Updated 11 months ago
- The code used to generate the results from Parkinson / Hard et al. 2022☆17Updated 3 months ago
- A domain parser for Alphafold models☆34Updated last year
- Repository for Protein-Vec, a protein embedding mixture of experts model☆37Updated last year
- ☆26Updated 2 years ago
- ☆20Updated last month
- Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.☆13Updated last month
- Results and data from the pilot round of the Protein Engineering Tournament☆26Updated 2 months ago
- ☆24Updated 3 years ago
- Adapting protein language models for structure-conditioned design☆35Updated 6 months ago
- An antibody-specific language model focusing on NGL prediction☆15Updated 8 months ago