Log shell-commands and used files. Snapshot executed scripts. Fully automatic.
☆215Apr 10, 2025Updated last year
Alternatives and similar repositories for shournal
Users that are interested in shournal are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A bash/biobash library for workflow and pipeline design☆10Jul 2, 2025Updated last year
- Nextflow pipeline that runs DESeq2 on data processed with the nextflow RNAseq pipeline☆13Dec 2, 2025Updated 10 months ago
- Tool comparison for detecting differentially expressed individual transposable elements☆12Jan 7, 2022Updated 4 years ago
- Snakemake with pytest example☆11Jul 18, 2020Updated 6 years ago
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆437Sep 2, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Command line scientific data management tool☆229Nov 4, 2024Updated last year
- A method to rapidly assess cell type identity using both functional and random gene sets☆15May 2, 2019Updated 7 years ago
- Minhash Index Extended to Knead Kmer Intersection☆11Mar 18, 2020Updated 6 years ago
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆16Jan 16, 2024Updated 2 years ago
- A program for the analysis of single cell nanopore long read data☆22Jul 1, 2025Updated last year
- ☆22Oct 1, 2026Updated last week
- Example genomics data for tool developers☆119Jul 7, 2024Updated 2 years ago
- BigWig and BAM utilities☆104Sep 19, 2026Updated 3 weeks ago
- sfasta☆35Feb 25, 2026Updated 7 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆57Oct 7, 2026Updated last week
- The D4 Quantitative Data Format☆176Nov 28, 2025Updated 10 months ago
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures☆12Jun 15, 2023Updated 3 years ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆19Apr 1, 2024Updated 2 years ago
- Tutorials in datamining and bioinformatics☆12Jan 18, 2024Updated 2 years ago
- A tool for somatic structural variant calling using long reads☆180Jun 8, 2026Updated 4 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆20Dec 5, 2023Updated 2 years ago
- A high-performance BigWig and BigBed library in Rust☆127Aug 14, 2026Updated last month
- Tool for plotting sequencing data along genomic coordinates.☆356Dec 12, 2025Updated 10 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- base-level dotplots from PAF alignments☆36Sep 18, 2025Updated last year
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31May 25, 2026Updated 4 months ago
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆75Dec 4, 2024Updated last year
- Repository for signature genes from Immune Cell Atlas☆20Sep 25, 2019Updated 7 years ago
- ☆10Jan 19, 2019Updated 7 years ago
- Inference of TCR motifs☆33Jun 17, 2025Updated last year
- A tool to find sequencing data and metadata from public databases.☆604Aug 13, 2024Updated 2 years ago
- Shiny App for comparison of samples and plotting effect size☆29Apr 9, 2024Updated 2 years ago
- Copy number caller for long read data including SNV utilization☆72Mar 31, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Chromatin ACcessibility and Transcriptomics Unifying Software☆20Oct 25, 2024Updated last year
- Fast fusion detection using kallisto☆80Jun 11, 2025Updated last year
- Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.☆141Updated this week
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- Genomewide Epistasis Analysis on Bacteria☆15Aug 7, 2026Updated 2 months ago
- chitin: an awful shell for awful bioinformaticians☆60Mar 25, 2020Updated 6 years ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆59Sep 18, 2026Updated 3 weeks ago