Alternatives and similar repositories for shournal

Users that are interested in shournal are comparing it to the libraries listed below

• agordon / datamash
  mirror of GNU Datamash. Send questions/comments/bugs to bug-datamash@gnu.org
  ☆75Updated 3 months ago
• micans / apparix
  Command line directory bookmarks with jumping to bookmarks, subdirectory tab completion, distant listing etc
  ☆44Updated 4 months ago
• micans / bash-utils
  Unix terminal histograms, sequencing depth and bar charts (hissyfit). Small data/file munge, morph, find and count scripts/functions in v…
  ☆22Updated last month
• codechenx / tv
  tv(table viewer) for delimited text file(csv,tsv,etc) in terminal.
  ☆45Updated 4 years ago
• Rbfinch / grepq
  quickly filter fastq files by matching sequences to a set of regex patterns
  ☆54Updated last week
• douglasgscofield / tinyutils
  Collection of tiny utilities for working on data streams
  ☆12Updated 2 years ago
• gogetdata / ggd-cli
  The command-line interface to GGD
  ☆43Updated 2 years ago
• osthomas / tree-sitter-snakemake
  snakemake grammar for tree-sitter, based on tree-sitter-python
  ☆11Updated last month
• brentp / gargs
  better(?) xargs in go
  ☆145Updated 7 years ago
• Snakemake-Profiles / doc
  Documentation of the Snakemake-Profiles project.
  ☆55Updated 3 years ago
• fastqe / biomojify
  Convert bioinformatics files to an emoji format.
  ☆23Updated 2 years ago
• JasonYangShadow / lpmx
  A novel composable rootless container system
  ☆45Updated 3 years ago
• shenwei356 / brename
  A practical cross-platform command-line tool for safely batch renaming files/directories via regular expression
  ☆294Updated 2 months ago
• arq5x / filo
  Useful FILe and stream Operations
  ☆45Updated 9 years ago
• 38 / d4-format
  The D4 Quantitative Data Format
  ☆166Updated 2 months ago
• snakemake-workflows / cookiecutter-snakemake-workflow
  A cookiecutter template for Snakemake workflows
  ☆59Updated 3 years ago
• MadsAlbertsen / miscperlscripts
  Small collection of random useful perl scripts
  ☆21Updated 11 years ago
• mbhall88 / ssubmit
  Submit slurm sbatch jobs without a script
  ☆69Updated 10 months ago
• kloetzl / biozsh
  the z in bioinformatics
  ☆33Updated last year
• LukeGoodsell / nextflow-vim
  Nextflow plugin for VIM
  ☆50Updated 2 years ago
• circulosmeos / gztool
  extract random-positioned data from gzip files with no penalty, including gzip tailing like with 'tail -f' !
  ☆141Updated 7 months ago
• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆101Updated 2 weeks ago
• enormandeau / Scripts
  Collection of various scripts
  ☆81Updated last month
• emanuele / git-annex_tutorial
  A tutorial for using git-annex to shared large datasets and code within the Lab.
  ☆53Updated 2 years ago
• tfenne / pipebuffer
  A command line program for large scale buffering between piped programs
  ☆16Updated 3 years ago
• BioArchLinux / Packages
  Aim to be the bioinformatics repository with more and newer packages https://doi.org/10.1093/bioinformatics/btaf106
  ☆95Updated this week
• COMBINE-lab / simpleaf
  A rust framework to make using alevin-fry even simpler
  ☆54Updated 2 months ago
• eriqande / eca-bioinf-handbook
  Lecture notes/book in progress on computing for conservation genomics
  ☆37Updated last year
• bihealth / vcfpy
  Python 3 library with good support for both reading and writing VCF
  ☆111Updated last year
• grst / containerize-conda
  Turn an existing conda environment into a Singularity container
  ☆80Updated 2 years ago