Log shell-commands and used files. Snapshot executed scripts. Fully automatic.
☆211Apr 10, 2025Updated last year
Alternatives and similar repositories for shournal
Users that are interested in shournal are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A bash/biobash library for workflow and pipeline design☆10Jul 2, 2025Updated 9 months ago
- Tool comparison for detecting differentially expressed individual transposable elements☆11Jan 7, 2022Updated 4 years ago
- Nextflow pipeline that runs DESeq2 on data processed with the nextflow RNAseq pipeline☆13Dec 2, 2025Updated 4 months ago
- Snakemake with pytest example☆11Jul 18, 2020Updated 5 years ago
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆410Apr 1, 2026Updated 3 weeks ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A method to rapidly assess cell type identity using both functional and random gene sets☆13May 2, 2019Updated 6 years ago
- Command line scientific data management tool☆231Nov 4, 2024Updated last year
- Minhash Index Extended to Knead Kmer Intersection☆11Mar 18, 2020Updated 6 years ago
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆15Jan 16, 2024Updated 2 years ago
- A program for the analysis of single cell nanopore long read data☆20Jul 1, 2025Updated 9 months ago
- ☆22Jan 3, 2025Updated last year
- Example genomics data for tool developers☆119Jul 7, 2024Updated last year
- sfasta☆35Feb 25, 2026Updated 2 months ago
- BigWig and BAM utilities☆103Mar 26, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- The D4 Quantitative Data Format☆172Nov 28, 2025Updated 5 months ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆19Apr 1, 2024Updated 2 years ago
- A tool for somatic structural variant calling using long reads☆169Apr 9, 2026Updated 3 weeks ago
- Tutorials in datamining and bioinformatics☆12Jan 18, 2024Updated 2 years ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆52Apr 22, 2026Updated last week
- A high-performance BigWig and BigBed library in Rust☆113Feb 13, 2026Updated 2 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆20Dec 5, 2023Updated 2 years ago
- Tool for plotting sequencing data along genomic coordinates.☆340Dec 12, 2025Updated 4 months ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30May 3, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Foundations for the Rust omics ecosystem.☆16Mar 19, 2026Updated last month
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆74Dec 4, 2024Updated last year
- SQL support plugin for Nextflow☆32Sep 15, 2025Updated 7 months ago
- Tool to flag foldback and chimeric artifacts in long-read sequence alignment files☆39Updated this week
- Repository for signature genes from Immune Cell Atlas☆20Sep 25, 2019Updated 6 years ago
- ☆10Jan 19, 2019Updated 7 years ago
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures☆12Jun 15, 2023Updated 2 years ago
- base-level dotplots from PAF alignments☆33Sep 18, 2025Updated 7 months ago
- Inference of TCR motifs☆32Jun 17, 2025Updated 10 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A tool to find sequencing data and metadata from public databases.☆597Aug 13, 2024Updated last year
- Copy number caller for long read data including SNV utilization☆69Mar 31, 2025Updated last year
- Fast fusion detection using kallisto☆79Jun 11, 2025Updated 10 months ago
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- genes and genomes at your fingertips☆411Mar 5, 2026Updated last month
- AWS for Bioinformatics Researchers☆193Jul 17, 2025Updated 9 months ago
- MGnify API toolkit☆19Jan 31, 2025Updated last year