Example genomics data for tool developers
☆119Jul 7, 2024Updated last year
Alternatives and similar repositories for bio-data-zoo
Users that are interested in bio-data-zoo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Rust library for storing generic genomic data by sorted chromosome name☆17Sep 26, 2024Updated last year
- expressions on VCFs☆91Mar 17, 2026Updated last month
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated 9 months ago
- sunburst plots for taxonomy - working to update Krona☆44Sep 22, 2025Updated 7 months ago
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆21Dec 9, 2025Updated 4 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆41Mar 9, 2026Updated last month
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated 10 months ago
- Experimental plugin to integrate GPT like prompt into Nextflow☆17Apr 15, 2024Updated 2 years ago
- Simple-to-use interactive comparison of two bacterial genomes☆28Jan 30, 2026Updated 3 months ago
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆30Aug 26, 2024Updated last year
- Download FASTQ files from SRA or ENA repositories.☆385Feb 1, 2026Updated 3 months ago
- µbinfie blog☆19Jul 21, 2025Updated 9 months ago
- Command line scientific data management tool☆231Nov 4, 2024Updated last year
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Mar 29, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆50Apr 24, 2026Updated last week
- Metagenomic binning using low-density hashing a support vector machine☆20Oct 2, 2020Updated 5 years ago
- What should perfect bioinformatic tools be like?☆146Nov 2, 2025Updated 5 months ago
- Easy genomic regions for short-read variant calling☆46Sep 10, 2025Updated 7 months ago
- Bitpacked sequence trait and implementation☆18Feb 27, 2026Updated 2 months ago
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆17Jul 8, 2024Updated last year
- Host depletion optimised for clinical metagenomic sequencing applications☆17Nov 18, 2024Updated last year
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆302Feb 3, 2026Updated 2 months ago
- R Bindings for htslib/bcf☆10Oct 4, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Tool for plotting sequencing data along genomic coordinates.☆340Dec 12, 2025Updated 4 months ago
- ☆31Mar 30, 2026Updated last month
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- Params validation plugin for Nextflow pipelines☆48Aug 7, 2024Updated last year
- Python and Rust library for loading, saving, and manipulating taxonomic trees☆54Apr 14, 2026Updated 2 weeks ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆24Nov 20, 2025Updated 5 months ago
- Write-once-read-many table for large datasets.☆27Oct 5, 2023Updated 2 years ago
- Detect contigs of complete circular genomes☆23Jun 6, 2019Updated 6 years ago
- A SIMD-accelerated library to compute random minimizers☆42Apr 6, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆58Aug 6, 2023Updated 2 years ago
- ☆45Oct 30, 2024Updated last year
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Apr 16, 2026Updated 2 weeks ago
- Bifrost graph gene caller.☆98Apr 12, 2026Updated 2 weeks ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆22Dec 9, 2025Updated 4 months ago
- A repo with just adapter sequences☆15Jul 7, 2025Updated 9 months ago
- A tool to find sequencing data and metadata from public databases.☆597Aug 13, 2024Updated last year