Example genomics data for tool developers
☆119Jul 7, 2024Updated 2 years ago
Alternatives and similar repositories for bio-data-zoo
Users that are interested in bio-data-zoo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Rust library for storing generic genomic data by sorted chromosome name☆17Sep 26, 2024Updated last year
- expressions on VCFs☆93Mar 17, 2026Updated 4 months ago
- Run a command and report its process tree's CPU, memory, and I/O usage☆21Updated this week
- Fast approximate string searching☆159Jul 13, 2026Updated last week
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆22Dec 9, 2025Updated 7 months ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆45Jul 16, 2026Updated last week
- A scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with Sequenc…☆15Updated this week
- sunburst plots for taxonomy - working to update Krona☆45Sep 22, 2025Updated 10 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated last year
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆45Mar 9, 2026Updated 4 months ago
- Experimental plugin to integrate GPT like prompt into Nextflow☆17Apr 15, 2024Updated 2 years ago
- Tearing through FASTA/Q sequences☆38Jul 9, 2026Updated 2 weeks ago
- Download FASTQ files from SRA or ENA repositories.☆397May 16, 2026Updated 2 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆20Jan 13, 2026Updated 6 months ago
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆33Aug 26, 2024Updated last year
- µbinfie blog☆19Jul 21, 2025Updated last year
- A SIMD-accelerated library to compute random minimizers☆46Jul 7, 2026Updated 2 weeks ago
- What should perfect bioinformatic tools be like?☆159May 19, 2026Updated 2 months ago
- Command line scientific data management tool☆230Nov 4, 2024Updated last year
- Metagenomic binning using low-density hashing a support vector machine☆20Oct 2, 2020Updated 5 years ago
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Mar 29, 2025Updated last year
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆51May 5, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆27Jun 25, 2026Updated 3 weeks ago
- ☆25Dec 5, 2025Updated 7 months ago
- an API for intersections of genomic data☆148Mar 12, 2026Updated 4 months ago
- Bacterial GWAS analysis☆57Jun 12, 2026Updated last month
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated 2 weeks ago
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆17Jul 8, 2024Updated 2 years ago
- Tool for plotting sequencing data along genomic coordinates.☆350Dec 12, 2025Updated 7 months ago
- R Bindings for htslib/bcf☆10Oct 4, 2023Updated 2 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆69Apr 10, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- Params validation plugin for Nextflow pipelines☆48Aug 7, 2024Updated last year
- Easy genomic regions for short-read variant calling☆46Sep 10, 2025Updated 10 months ago
- Python and Rust library for loading, saving, and manipulating taxonomic trees☆54Jun 22, 2026Updated last month
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆22Jan 22, 2026Updated 6 months ago
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 4 months ago
- Detect contigs of complete circular genomes☆23Jun 6, 2019Updated 7 years ago