omgenomics / bio-data-zooLinks
Example genomics data for tool developers
☆113Updated last year
Alternatives and similar repositories for bio-data-zoo
Users that are interested in bio-data-zoo are comparing it to the libraries listed below
Sorting:
- What should perfect bioinformatic tools be like?☆128Updated 2 months ago
- coding exercise using TCGA immune infiltration data☆45Updated last year
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆79Updated last week
- machine-readable file format for genomic library sequence and structure☆120Updated this week
- Demonstrating best practices for bioinformatics command line tools☆117Updated 4 years ago
- An efficient CLI to extract sequences from the SRA☆108Updated 3 weeks ago
- Fast and flexible ORF finder☆73Updated 3 years ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆64Updated last week
- NBIS/Elixir course: Tools for Reproducible Research☆64Updated 3 weeks ago
- ☆79Updated last month
- Module for embedding igv.js in an IPython notebook☆76Updated 5 months ago
- Nextflow training material for introductory tutorial☆105Updated 3 years ago
- Config files used to define parameters specific to compute environments at different Institutions☆101Updated this week
- A small-RNA sequencing analysis pipeline☆87Updated last month
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆102Updated last month
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆115Updated 5 months ago
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆86Updated last year
- A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA☆106Updated 5 years ago
- A simple RNA-Seq differential gene expression pipeline using Nextflow☆101Updated last week
- Analysis and Visualization of Ribosome Profiling Data☆31Updated 2 months ago
- A Rust library and command line tool for working with genomic ranges and their data.☆101Updated last year
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆46Updated 2 years ago
- Making bioinformatics fun again☆73Updated last month
- Merging paired-end reads and removing adapters☆44Updated 4 months ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆129Updated 2 weeks ago
- Analyze your RNA sequencing data without writing a single line of code☆135Updated last month
- Python introduction for life scientists☆46Updated 2 months ago
- Grep for FASTQ files☆98Updated 3 months ago
- Data Science Operations (dso) command line tool☆41Updated 2 months ago
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆76Updated this week