Alternatives and similar repositories for bio-data-zoo

Users that are interested in bio-data-zoo are comparing it to the libraries listed below

• shenwei356 / perfect-bioinformatic-tools
  What should perfect bioinformatic tools be like?
  ☆131Updated 3 months ago
• immunitastx / coding_exercise_TCGA_infiltration
  coding exercise using TCGA immune infiltration data
  ☆45Updated last year
• nf-core / differentialabundance
  Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
  ☆81Updated this week
• seqeralabs / wave-showcase
  Examples showing how to configure Nextflow to run with Wave containers provisioning service
  ☆21Updated 9 months ago
• hoelzer-lab / rnaflow
  A simple RNA-Seq differential gene expression pipeline using Nextflow
  ☆102Updated 3 weeks ago
• ArcInstitute / xsra
  An efficient CLI to extract sequences from the SRA
  ☆111Updated last month
• htseq / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆106Updated 2 months ago
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆73Updated 3 years ago
• igvteam / igv-notebook
  Module for embedding igv.js in an IPython notebook
  ☆78Updated 6 months ago
• seqeralabs / nextflow-tutorial
  Nextflow training material for introductory tutorial
  ☆106Updated 3 years ago
• nf-core / configs
  Config files used to define parameters specific to compute environments at different Institutions
  ☆103Updated this week
• jsh58 / NGmerge
  Merging paired-end reads and removing adapters
  ☆46Updated 5 months ago
• bionitio-team / bionitio
  Demonstrating best practices for bioinformatics command line tools
  ☆117Updated 4 years ago
• nf-core / airrflow
  B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
  ☆67Updated 3 weeks ago
• foerstner-lab / gffpandas
  Parse GFF3 into Pandas dataframes
  ☆30Updated last year
• sheynkman-lab / Long-Read-Proteogenomics
  A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
  ☆48Updated 2 years ago
• refresh-bio / SPLASH
  ☆80Updated 3 weeks ago
• riboviz / riboviz
  Analysis and Visualization of Ribosome Profiling Data
  ☆31Updated 3 months ago
• louiejtaylor / grabseqs
  A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
  ☆107Updated last week
• HadrienG / tutorials
  Various bioinformatics tutorials
  ☆61Updated last year
• IARCbioinfo / BAM-tricks
  Tip and tricks for BAM files
  ☆86Updated 7 years ago
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆43Updated 2 months ago
• nf-core / oncoanalyser
  A comprehensive cancer DNA/RNA analysis and reporting pipeline
  ☆80Updated this week
• lskatz / awesome-bioinformatics-education
  resources for bioinformatics education
  ☆86Updated 3 months ago
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆101Updated last year
• bpucker / PythonTUBS
  Python introduction for life scientists
  ☆46Updated 3 months ago
• sbslee / fuc
  Frequently used commands in bioinformatics
  ☆57Updated 10 months ago
• pachterlab / seqspec
  machine-readable file format for genomic library sequence and structure
  ☆121Updated this week
• NBISweden / workshop-reproducible-research
  NBIS/Elixir course: Tools for Reproducible Research
  ☆64Updated last week
• fulcrumgenomics / fqgrep
  Grep for FASTQ files
  ☆99Updated 4 months ago