broadinstitute / genepyLinks
Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python
☆21Updated 2 years ago
Alternatives and similar repositories for genepy
Users that are interested in genepy are comparing it to the libraries listed below
Sorting:
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 3 years ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 4 years ago
- Universal RObust Peak Annotator☆16Updated 2 years ago
- A Python package for gene network analysis☆32Updated 3 years ago
- ☆24Updated this week
- An unsupervised transfer learning approach for rare disease transcriptomics☆46Updated 5 years ago
- Creates a target specific exome_full192.coverage.txt file required by MutSig☆21Updated 4 years ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆46Updated 2 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Updated 4 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 6 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- ☆40Updated 6 months ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆24Updated last year
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆15Updated 7 years ago
- scRNAseq integration with triplet neural networks☆41Updated 3 years ago
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆26Updated 3 years ago
- High-definition modeling of chromatin + transcriptomics data☆26Updated 9 months ago
- Bayesian mixture models for estimating and clustering cancer cell fractions☆24Updated 3 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆41Updated 2 months ago
- Refining the impact of genetic evidence on clinical success☆27Updated last year
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated 2 years ago
- ☆16Updated last year
- Tissue-specific variant effect predictions on splicing☆43Updated 2 years ago
- Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap☆18Updated 5 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 3 years ago
- Scripts for using scanpy☆38Updated 2 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆31Updated 9 months ago