Alternatives and similar repositories for omics

Users that are interested in omics are comparing it to the libraries listed below

• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆100Updated last month
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated last year
• ostnam / rust-wfa
  ☆11Updated 3 years ago
• bsaintjo / slow5-rs
  Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
  ☆10Updated 11 months ago
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆78Updated 6 months ago
• luizirber / nthash
  ntHash implementation in Rust
  ☆36Updated last year
• RagnarGrootKoerkamp / sassy
  Fast approximate string searching
  ☆56Updated last month
• jeff-k / bio-seq
  Bit-packed and well-typed biological sequences
  ☆37Updated this week
• suchapalaver / krust
  Bioinformatics 101 tool for counting unique k-length substrings in DNA
  ☆31Updated 2 years ago
• COMBINE-lab / terminus
  ☆57Updated 3 years ago
• aseyboldt / fastq-rs
  ☆50Updated 3 years ago
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆28Updated last month
• luizirber / niffler
  Simple and transparent support for compressed files.
  ☆80Updated 7 months ago
• stjude-rust-labs / ngs
  Command line utility for working with next-generation sequencing files.
  ☆36Updated 3 months ago
• stjude-rust-labs / sprocket
  A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).
  ☆91Updated this week
• natir / biotest
  Generate random test data for bioinformatics
  ☆26Updated last year
• rust-seq / simd-minimizers
  A SIMD-accelerated library to compute random minimizers
  ☆33Updated this week
• informationsea / vcf-rs
  Rust implmentation of VCF parser
  ☆25Updated 3 years ago
• ocxtal / udon
  BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing
  ☆20Updated 2 years ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆31Updated last year
• TravisWheelerLab / sufr
  Parallel Construction of Suffix Arrays in Rust
  ☆26Updated 5 months ago
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆30Updated 2 years ago
• stjude-rust-labs / wdl
  Rust crates for working with Workflow Description Language (WDL) documents.
  ☆57Updated 2 weeks ago
• RagnarGrootKoerkamp / simd-sketch
  Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.
  ☆19Updated last week
• RagnarGrootKoerkamp / rust-phylogeny
  Rust package for constructing and analyzing phylogenies.
  ☆15Updated 5 months ago
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆75Updated last week
• hhandika / segul
  An ultrafast and memory efficient tool for phylogenomics
  ☆26Updated 2 months ago
• 38 / grass
  ☆22Updated 3 years ago
• 10XGenomics / rust-toolbox
  Rust utility code
  ☆32Updated last year
• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆54Updated 3 weeks ago