Alternatives and similar repositories for omics

Users that are interested in omics are comparing it to the libraries listed below

• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆50Updated last month
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated 10 months ago
• natir / biotest
  Generate random test data for bioinformatics
  ☆26Updated 10 months ago
• ostnam / rust-wfa
  ☆11Updated 2 years ago
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆75Updated this week
• stjude-rust-labs / ngs
  Command line utility for working with next-generation sequencing files.
  ☆35Updated last month
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆29Updated 10 months ago
• brentp / vcfexpress
  expressions on VCFs
  ☆83Updated 3 weeks ago
• jguhlin / sfasta
  sfasta
  ☆35Updated last week
• brentp / spacepile
  convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.
  ☆14Updated 2 years ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆62Updated 8 months ago
• pangenome / impg
  implicit pangenome graph
  ☆58Updated last week
• wdecoster / kyber
  ☆21Updated 4 months ago
• jeff-k / bio-seq
  Bit-packed and well-typed biological sequences
  ☆33Updated last week
• pairwise-alignment / pa-bench
  Benchmarking pairwise aligners
  ☆36Updated 3 months ago
• stjude-rust-labs / sprocket
  A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).
  ☆70Updated this week
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆23Updated 3 months ago
• RagnarGrootKoerkamp / sassy
  Fast approximate string searching
  ☆18Updated this week
• bsaintjo / slow5-rs
  Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
  ☆10Updated 6 months ago
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆90Updated 2 weeks ago
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆52Updated 8 months ago
• alejandrogzi / gtfsort
  a lexicographically-based GTF/GFF sorter
  ☆34Updated 2 weeks ago
• marschall-lab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated last month
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆101Updated 11 months ago
• varfish-org / mehari
  VEP-like tool for sequence ontology and HGVS annotation of VCF files
  ☆20Updated last week
• rust-seq / simd-minimizers
  A SIMD-accelerated library to compute random minimizers
  ☆18Updated last week
• suchapalaver / krust
  Bioinformatics 101 tool for counting unique k-length substrings in DNA
  ☆30Updated last year
• AlgoLab / RecGraph
  Optimal sequence-to-graph alignment with recombinations
  ☆32Updated 2 months ago
• COMBINE-lab / piscem
  Rust wrapper for the next generation (still currently in C++)
  ☆25Updated 3 months ago
• ArcInstitute / binseq
  A high efficiency binary format for sequencing data
  ☆45Updated last week