Foundations for the Rust omics ecosystem.
☆35Jul 23, 2026Updated 2 months ago
Alternatives and similar repositories for omics
Users that are interested in omics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A performant Kubernetes-based task executor for the Task Execution Service (TES) 1.1 specification.☆18Updated this week
- Rust crates for working with Workflow Description Language (WDL) documents.☆62Sep 23, 2025Updated last year
- A crate for working with genomics chain files.☆15Jul 20, 2026Updated 2 months ago
- A Rust-based, headless workflow execution framework supporting local, cloud, and HPC.☆61Oct 6, 2026Updated last week
- FUSE filesystem for the DNAnexus storage system☆13Apr 24, 2026Updated 5 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A crate for working with the Task Execution Service (TES) specification.☆14Oct 1, 2026Updated last week
- A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).☆218Updated this week
- Command line utility for working with next-generation sequencing files.☆39Jun 24, 2025Updated last year
- ☆12Sep 27, 2023Updated 3 years ago
- Create WDL documentation using Markdown.☆29Nov 25, 2025Updated 10 months ago
- Command line utility for manipulating FASTQ files☆104Sep 22, 2026Updated 3 weeks ago
- convert variation graph alignments to coverage maps over nodes☆28Jan 21, 2026Updated 8 months ago
- fastest GTF/GFF-to-BED converter chilling around☆32Jun 16, 2026Updated 3 months ago
- ☆11Dec 9, 2022Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆29Oct 5, 2026Updated last week
- Forensic analysis tool useful in backwards computing information from next-generation sequencing data.☆11Sep 7, 2026Updated last month
- Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale product…☆12Sep 9, 2025Updated last year
- A Rust library for storing generic genomic data by sorted chromosome name☆18Sep 26, 2024Updated 2 years ago
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- Arbitrary width integers☆31Aug 26, 2026Updated last month
- bedtools-like functionality for interval sets in rust☆56Aug 5, 2025Updated last year
- Tools to gather evidence for structural variation via breakpoint detection.☆20Mar 27, 2026Updated 6 months ago
- Differentiable Neural Computer implementation in Tensorflow☆34Feb 25, 2017Updated 9 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated 2 years ago
- GA4GH Quality Control of Whole Genome Sequencing's metrics definition, benchmark resources and reference implementations☆26Sep 20, 2026Updated 3 weeks ago
- STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed spe…☆18May 4, 2026Updated 5 months ago
- Collection of bioinformatics-related WDL modules and pipelines☆27Updated this week
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 3 years ago
- Spiritual successor to picard for sequencing qc☆63Oct 5, 2026Updated last week
- omniCLIP is a CLIP-Seq peak caller☆16Nov 14, 2020Updated 5 years ago
- Bioinformatics I/O libraries in Rust☆727Updated this week
- Cuda-based matrix/vector computations☆12Feb 25, 2020Updated 6 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Rust on the Quansheng UV-K5 Radio☆11Jul 9, 2024Updated 2 years ago
- gia: Genomic Interval Arithmetic☆69Aug 21, 2024Updated 2 years ago
- STT Service based on Kaldi ASR☆15Aug 17, 2018Updated 8 years ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆139Sep 8, 2026Updated last month
- Really small preemptive scheduler :)☆17Oct 21, 2025Updated 11 months ago
- A clojure implementation of parsing with derivatives☆17Mar 6, 2014Updated 12 years ago
- A multi-platform file-configurable folder comparison tool with html-reporting written in rust☆13Jul 7, 2026Updated 3 months ago