Alternatives and similar repositories for omics

Users that are interested in omics are comparing it to the libraries listed below

• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆101Updated 2 weeks ago
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated last year
• bsaintjo / slow5-rs
  Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
  ☆10Updated 8 months ago
• ostnam / rust-wfa
  ☆11Updated 3 years ago
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆79Updated 4 months ago
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆29Updated 3 months ago
• suchapalaver / krust
  Bioinformatics 101 tool for counting unique k-length substrings in DNA
  ☆31Updated last year
• jeff-k / bio-seq
  Bit-packed and well-typed biological sequences
  ☆35Updated 2 months ago
• luizirber / nthash
  ntHash implementation in Rust
  ☆36Updated last year
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆31Updated last year
• stjude-rust-labs / ngs
  Command line utility for working with next-generation sequencing files.
  ☆35Updated 3 weeks ago
• natir / biotest
  Generate random test data for bioinformatics
  ☆26Updated last year
• RagnarGrootKoerkamp / simd-sketch
  Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.
  ☆18Updated 3 weeks ago
• aseyboldt / fastq-rs
  ☆51Updated 2 years ago
• rust-seq / simd-minimizers
  A SIMD-accelerated library to compute random minimizers
  ☆30Updated 2 weeks ago
• RagnarGrootKoerkamp / rust-phylogeny
  Rust package for constructing and analyzing phylogenies.
  ☆15Updated 2 months ago
• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆52Updated last week
• informationsea / vcf-rs
  Rust implmentation of VCF parser
  ☆23Updated 2 years ago
• bede / deacon
  Fast (host) DNA sequence filtering
  ☆66Updated last week
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆31Updated last year
• ocxtal / udon
  BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing
  ☆20Updated last year
• algbio / ggcat
  Compacted and colored de Bruijn graph construction and querying
  ☆84Updated this week
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆75Updated 3 weeks ago
• TianyiShi2001 / bioinformatics-algorithms-rs
  Bioinformatics Algorithms implemented in Rust for Learners
  ☆32Updated 3 years ago
• Daniel-Liu-c0deb0t / ANTISEQUENCE
  Rust library for processing sequencing reads.
  ☆25Updated 10 months ago
• hhandika / segul
  An ultrafast and memory efficient tool for phylogenomics
  ☆26Updated last week
• pairwise-alignment / pa-bench
  Benchmarking pairwise aligners
  ☆36Updated 5 months ago
• jguhlin / sfasta
  sfasta
  ☆35Updated 2 months ago
• AlgoLab / RecGraph
  Optimal sequence-to-graph alignment with recombinations
  ☆36Updated 4 months ago
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated last year