ctb / 2019-snakemake-ucdavis
Intro to workflows for efficient automated data analysis, using snakemake.
☆32Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for 2019-snakemake-ucdavis
- deepStats: a stastitical toolbox for deeptools and genomic signals☆32Updated 3 years ago
- Differential expression and allelic analysis, nonparametric statistics☆27Updated last year
- Transcript quantification import with automatic metadata detection☆67Updated last month
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated 8 months ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆25Updated 3 years ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 3 months ago
- ☆16Updated last year
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆18Updated 7 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- Differential ATAC-seq toolkit☆27Updated 11 months ago
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL.☆14Updated 10 years ago
- Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline☆21Updated last month
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated 7 months ago
- Flexible Bayesian inference of mutational signatures☆33Updated last year
- Converts 'MultiQC' Reports into Tidy Data Frames☆14Updated 7 months ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated last month
- Genomic plot in trellis layout☆39Updated 8 months ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 6 years ago
- ☆25Updated last year
- ☆28Updated 4 months ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 10 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆25Updated 8 years ago
- interactive plots for differential expression analysis☆25Updated 2 months ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆26Updated last year
- Bioconductor package that makes BIG data pint-sized.☆20Updated 9 months ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- RNA-seq data comprehensive data analysis toolbox☆19Updated 2 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆36Updated this week