ctb / 2019-snakemake-ucdavis
Intro to workflows for efficient automated data analysis, using snakemake.
☆32Updated 5 years ago
Alternatives and similar repositories for 2019-snakemake-ucdavis:
Users that are interested in 2019-snakemake-ucdavis are comparing it to the libraries listed below
- Transcript quantification import with automatic metadata detection☆67Updated 2 months ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- Flexible Bayesian inference of mutational signatures☆34Updated 2 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆20Updated 7 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- Make rapid visualizations of RNA-seq data in R☆19Updated 5 years ago
- Differential expression and allelic analysis, nonparametric statistics☆28Updated 3 months ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- ☆21Updated 7 months ago
- Tutorial to reproduce the analysis of Peixoto et al. (2015)☆9Updated 9 years ago
- A command line tool to compute mapping statistics from a BAM file☆23Updated 3 years ago
- Genomic data interpretation and visualization Workshop☆19Updated last year
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 7 years ago
- a set of NGS pipelines☆24Updated last week
- Genomic plot in trellis layout☆39Updated last year
- Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline☆21Updated 3 months ago
- 📊 An R package of RNA-seq workflow☆16Updated 2 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- ☆12Updated 7 years ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆18Updated last year
- Sashimi plots for RNA-seq data using detected transcripts☆27Updated 2 weeks ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 3 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆36Updated last week
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 8 months ago
- interactive plots for differential expression analysis☆32Updated last week
- ☆16Updated 7 years ago