ctb / 2019-snakemake-ucdavisLinks
Intro to workflows for efficient automated data analysis, using snakemake.
☆32Updated 6 years ago
Alternatives and similar repositories for 2019-snakemake-ucdavis
Users that are interested in 2019-snakemake-ucdavis are comparing it to the libraries listed below
Sorting:
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Transcript quantification import with automatic metadata detection☆67Updated last month
- A small R package to make sequencing read coverage plots in R.☆39Updated last week
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline☆20Updated 10 months ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last month
- Differential expression and allelic analysis, nonparametric statistics☆30Updated 10 months ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated 2 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 7 years ago
- Genomic plot in trellis layout☆41Updated last year
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 11 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Updated 4 months ago
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆20Updated 8 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 7 months ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Updated 5 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- Glimma R package☆50Updated last year
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- ☆22Updated 3 weeks ago
- Geared towards life scientists wanting to be able to understand and use basic statistical and machine learning methods☆16Updated 4 months ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆18Updated last year