A pan-cancer analysis of the microbiome in metastatic cancer (Battaglia et. al, Cell, 2024)
☆14Apr 9, 2024Updated last year
Alternatives and similar repositories for tumor-microbiome
Users that are interested in tumor-microbiome are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Software used to develop the TCMA database associated with 10.1016/j.chom.2020.12.001.☆14Nov 26, 2023Updated 2 years ago
- ☆19Oct 26, 2021Updated 4 years ago
- Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022☆39Jan 30, 2024Updated 2 years ago
- A convenient pipeline for processing of multi-strain bacterial RNA-Seq experiments☆11Dec 1, 2020Updated 5 years ago
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆14Aug 3, 2022Updated 3 years ago
- my first book, Biological information analysis of cancer tumors☆26Mar 8, 2022Updated 4 years ago
- ☆14Feb 21, 2024Updated 2 years ago
- ☆11Mar 10, 2024Updated 2 years ago
- A repository for large-scale microbiome datasets, formatted for phyloseq☆41Apr 8, 2024Updated last year
- Critical downstream analysis steps for single-cell RNA sequencing data☆13Feb 21, 2021Updated 5 years ago
- A taxonomic classifier for shotgun metagenomics reads☆11Apr 4, 2025Updated 11 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆117Apr 26, 2025Updated 11 months ago
- ☆14Mar 18, 2022Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A pipeline for primary analysis of shotgun metagenomic sequencing data☆11Jun 10, 2019Updated 6 years ago
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆37Feb 17, 2026Updated last month
- ☆17Sep 20, 2019Updated 6 years ago
- Single-cell Graph Cuts Optimization☆16Apr 27, 2024Updated last year
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆28Oct 8, 2024Updated last year
- ☆26Aug 10, 2023Updated 2 years ago
- the toolbox for Microbial and personalized GEM, REactiobiome and community NEtwork modelling☆11Feb 3, 2024Updated 2 years ago
- GCtree: phylogenetic inference of genotype-collapsed trees☆18Aug 27, 2024Updated last year
- ☆12Feb 10, 2023Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- MirMachine, a command line tool to detect microRNA homologs in genome sequences.☆13Updated this week
- 🟣 Linear Algebra interview questions and answers to help you prepare for your next machine learning and data science interview in 2026.☆19Jan 4, 2026Updated 2 months ago
- miRTrace☆11Jun 14, 2023Updated 2 years ago
- Diagnostic functions to assess the quality of cell type annotations in single-cell RNA sequencing data☆13Jan 25, 2026Updated 2 months ago
- This repository contains teaching material for the 3rd International Summer School on Non-Targeted Metabolomics Data Mining for Biomedica…☆12Aug 25, 2023Updated 2 years ago
- Pangenome Analysis in Prokaryotes Lesson☆13Aug 20, 2024Updated last year
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated 10 months ago
- Bacterial Operon Finder for Functional Organization☆15Nov 14, 2023Updated 2 years ago
- ☆15Feb 3, 2023Updated 3 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆17Jun 24, 2021Updated 4 years ago
- Curated Metagenomic Data of the Human Microbiome☆151Jan 21, 2026Updated 2 months ago
- Comprehensive Single-Cell Annotation and Transcriptomic Analysis Toolkit☆14Mar 12, 2026Updated 2 weeks ago
- Build a map of genes present across a set of microbial genomes☆18Jan 23, 2026Updated 2 months ago
- Tumour Heterogeneity and Intercellular Networks of Nasopharyngeal Carcinoma at Single Cell Resolution☆13Mar 1, 2023Updated 3 years ago
- pipeline for the analysis of small RNA data☆14Jun 24, 2019Updated 6 years ago
- Pipelines used in the lab.☆15Mar 26, 2025Updated last year