twbattaglia / tumor-microbiomeLinks
A pan-cancer analysis of the microbiome in metastatic cancer (Battaglia et. al, Cell, 2024)
☆14Updated last year
Alternatives and similar repositories for tumor-microbiome
Users that are interested in tumor-microbiome are comparing it to the libraries listed below
Sorting:
- A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.☆28Updated 2 years ago
- Motif manipulation functions for R.☆30Updated last month
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆18Updated 2 years ago
- A script to make downloading of SRA/GEO data easier☆31Updated 2 years ago
- Code for the identification step for CSI-Microbes☆31Updated 11 months ago
- Snakemake pipeline for running MAJIQ☆23Updated last year
- 🧬 Gene analysis toolkit based on R☆58Updated 9 months ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 7 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated 3 weeks ago
- ☆62Updated 5 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- Bayesian network plot for the enrichment analysis results☆65Updated last year
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆20Updated last year
- Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs☆51Updated 3 months ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆20Updated 6 months ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 4 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- An R interface to the MEME Suite☆53Updated 4 months ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆63Updated 4 years ago
- binned motif enrichment analysis and visualisation☆42Updated last month
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- ☆34Updated 10 months ago
- A list of alternative splicing analysis resources☆46Updated 7 months ago
- ☆41Updated 3 years ago
- A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot☆74Updated last week
- A continually expanding collection of RNA-seq tools☆52Updated 3 weeks ago
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated last year
- documentation for trackViewer☆29Updated 6 years ago