A convenient pipeline for processing of multi-strain bacterial RNA-Seq experiments
☆11Dec 1, 2020Updated 5 years ago
Alternatives and similar repositories for multi-bacpipe
Users that are interested in multi-bacpipe are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A nextflow pipeline for performing bacterial RNA-Seq data analysis☆14Oct 15, 2026Updated 2 weeks ago
- Various scripts for efficient processing of 10k Salmonella genomes☆16Sep 16, 2021Updated 5 years ago
- A git repository with hands-on material for Data Science on KSL plattaforms☆14Oct 27, 2025Updated last year
- Dix-seq: An integrated pipeline for fast amplicon data analysis☆11Dec 9, 2024Updated last year
- Cell cycle pseudotime in single-cell RNA-seq☆10Mar 31, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- An Neural Networks based QSAR Model and a Connector to SSD☆10Sep 29, 2017Updated 9 years ago
- Companion repository for the human variant calling pipeline comparison paper☆12Feb 21, 2022Updated 4 years ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆16Jan 25, 2020Updated 6 years ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Jan 13, 2019Updated 7 years ago
- Fast and robust identificaiton of antibiotic resistance genes (ARGs) from microbial genomes and metagenome assemblies using ARGfams, a hi…☆11Dec 30, 2022Updated 3 years ago
- ☆14Mar 18, 2023Updated 3 years ago
- A pan-cancer analysis of the microbiome in metastatic cancer (Battaglia et. al, Cell, 2024)☆17Apr 9, 2024Updated 2 years ago
- Plot bacterial gene maps and genome comparison plots from command line with genoPlotR and GenomeDiagram☆13Mar 10, 2026Updated 7 months ago
- Peptide Virtual Screening Pipeline☆14Jul 3, 2019Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…☆14Oct 5, 2021Updated 5 years ago
- Draw pan- and core-genome curves from proteinortho output☆14Oct 26, 2023Updated 3 years ago
- Structural Bioinformatics Training Workshop & Hackathon 2017☆19Jan 23, 2018Updated 8 years ago
- Webpage of the "Introduction to RNA-Seq: From quality control to pathway analysis - streamed" SIB course.☆17Sep 24, 2026Updated last month
- ☆14Mar 8, 2021Updated 5 years ago
- ☆13Apr 5, 2022Updated 4 years ago
- A toolking for cell type hierarchies: marker selection & consistent classification☆23Nov 26, 2023Updated 2 years ago
- ☆23Apr 17, 2020Updated 6 years ago
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆28Oct 8, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A couple of tools I find indispensable for post orthomcl down-stream analysis.☆11Oct 2, 2019Updated 7 years ago
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 3 years ago
- A user-friendly tool to screen antimicrobial resistance in fungal genomes☆21May 8, 2026Updated 5 months ago
- ☆11Nov 30, 2025Updated 11 months ago
- An ultra-fast and accurate tool for KEGG Orthology (KO) assignment, powered by deep learning.☆25Oct 26, 2026Updated last week
- ☆11Feb 9, 2024Updated 2 years ago
- Microbial Culture Media Knowledge Graph - Comprehensive collection of 10,000+ culture media recipes from major international repositories…☆12Updated this week
- Predicting cleaved peptides in protein sequences☆11Jul 3, 2024Updated 2 years ago
- ☆25Apr 13, 2026Updated 6 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- https://weeklykagglenews.substack.com☆24Dec 31, 2022Updated 3 years ago
- Parser for Ghost Koala☆10Aug 23, 2018Updated 8 years ago
- AMPDeep: Hemolytic Activity Prediction of Antimicrobial Peptides using Transfer Learning☆11Aug 15, 2022Updated 4 years ago
- ☆19Jun 1, 2022Updated 4 years ago
- MGnify API toolkit☆18Updated this week
- Quasitools is a collection of tools for analysing viral quasispecies data.☆27Nov 25, 2021Updated 4 years ago
- MetaCHIP2☆11May 5, 2026Updated 5 months ago