Alternatives and similar repositories for handbook-cancer-genomics

Users that are interested in handbook-cancer-genomics are comparing it to the libraries listed below

• al-mcintyre / merip_reanalysis_scripts
  Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq
  ☆51Updated 5 years ago
• xryanglab / RiboCode
  release version
  ☆54Updated 3 years ago
• xuzhougeng / R-ChIP-data-analysis
  ☆50Updated 7 years ago
• AAlhendi1707 / countToFPKM
  Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)
  ☆62Updated 4 years ago
• pzweuj / pzweuj.github.io
  Go to
  ☆36Updated last week
• YuLab-SMU / createKEGGdb
  Create KEGG.db Package
  ☆62Updated 2 years ago
• YangLab / CIRCexplorer2
  circular RNA analysis toolset
  ☆85Updated last year
• XWangLabTHU / cfDNApipe
  cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data
  ☆71Updated 3 years ago
• openbiox / bioinformatics-100-days
  Learn and practice the bioinformatics skills in 100 Days.
  ☆79Updated 6 years ago
• scottzijiezhang / m6A-seq_analysis_workflow
  A pipeline to process m6A-seq data and down stream analysis.
  ☆45Updated 5 years ago
• shiquan / PISA
  A collection of tools to process single-cell omics datasets.
  ☆50Updated 4 months ago
• iprada / Circle-Map
  A method for circular DNA detection based on probabilistic mapping of ultrashort reads
  ☆66Updated last year
• canceromics / MeRIPseqPipe
  MeRIPseqPipe：An integrated analysis pipeline for MeRIP-seq data based on Nextflow.
  ☆41Updated last year
• benben-miao / TOmicsVis
  Transcriptomics Visualization R package.
  ☆74Updated 5 months ago
• RabadanLab / arcasHLA
  Fast and accurate in silico inference of HLA genotypes from RNA-seq
  ☆142Updated last year
• ShujiaHuang / ilus
  A lightweight and handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysi…
  ☆140Updated 4 months ago
• MonashBioinformaticsPlatform / RSeQC
  fork of RSeQC python RNAseq metrics suit of tools
  ☆49Updated 6 years ago
• best-practices-in-bioinformatics / basic
  ☆39Updated 8 years ago
• zhpn1024 / ribotish
  Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data
  ☆43Updated 10 months ago
• 3UTR / DaPars2
  Dynamics analysis of Alternative PolyAdenylation from RNA-seq
  ☆62Updated 2 years ago
• TRON-Bioinformatics / seq2HLA
  In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…
  ☆49Updated 2 months ago
• shenmengyuan / RNA_seq_Biotrainee
  DEG analysis and KEGG/GO enrichment analysis
  ☆69Updated 7 years ago
• zhxiaokang / RASflow
  RNA-Seq analysis workflow
  ☆105Updated 4 years ago
• ying-ge / FigureYa
  ☆222Updated this week
• jmzeng1314 / cnv
  ☆32Updated 7 years ago
• BioinfoUNIBA / REDItools2
  ☆59Updated 2 months ago
• broadinstitute / gistic2
  Genomic Identification of Significant Targets in Cancer (GISTIC), version 2
  ☆51Updated 3 years ago
• singleron-RD / CeleScope
  Single Cell Analysis Pipelines
  ☆107Updated last week
• MathOnco / NeoPredPipe
  Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.
  ☆112Updated last year
• sjdlabgroup / SAHMI
  ☆84Updated last year