Alternatives and similar repositories for handbook-cancer-genomics

Users that are interested in handbook-cancer-genomics are comparing it to the libraries listed below

• xuzhougeng / R-ChIP-data-analysis
  ☆50Updated 6 years ago
• pzweuj / pzweuj.github.io
  Go to
  ☆36Updated 3 weeks ago
• AAlhendi1707 / countToFPKM
  Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)
  ☆62Updated 4 years ago
• ShujiaHuang / ilus
  A lightweight and handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysi…
  ☆137Updated 2 months ago
• xryanglab / RiboCode
  release version
  ☆54Updated 3 years ago
• YuLab-SMU / createKEGGdb
  Create KEGG.db Package
  ☆61Updated 2 years ago
• jmzeng1314 / cnv
  ☆31Updated 7 years ago
• YangLab / CIRCexplorer2
  circular RNA analysis toolset
  ☆85Updated 11 months ago
• iprada / Circle-Map
  A method for circular DNA detection based on probabilistic mapping of ultrashort reads
  ☆65Updated last year
• al-mcintyre / merip_reanalysis_scripts
  Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq
  ☆51Updated 5 years ago
• MonashBioinformaticsPlatform / RSeQC
  fork of RSeQC python RNAseq metrics suit of tools
  ☆48Updated 6 years ago
• shiquan / PISA
  A collection of tools to process single-cell omics datasets.
  ☆48Updated 2 months ago
• canceromics / MeRIPseqPipe
  MeRIPseqPipe：An integrated analysis pipeline for MeRIP-seq data based on Nextflow.
  ☆41Updated last year
• zhxiaokang / RASflow
  RNA-Seq analysis workflow
  ☆104Updated 4 years ago
• best-practices-in-bioinformatics / basic
  ☆38Updated 7 years ago
• Xinglab / rmats2sashimiplot
  ☆148Updated 2 months ago
• XWangLabTHU / cfDNApipe
  cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data
  ☆69Updated 2 years ago
• WGLab / dragonstar2019
  ☆135Updated 5 years ago
• bcgsc / mirna
  microRNA profiling pipeline
  ☆79Updated 3 years ago
• benben-miao / TOmicsVis
  Transcriptomics Visualization R package.
  ☆73Updated 3 months ago
• scottzijiezhang / m6A-seq_analysis_workflow
  A pipeline to process m6A-seq data and down stream analysis.
  ☆45Updated 5 years ago
• rajewsky-lab / mirdeep2
  Discovering known and novel miRNAs from small RNA sequencing data
  ☆152Updated 11 months ago
• ENCODE-DCC / hic-pipeline
  HiC uniform processing pipeline
  ☆60Updated last year
• ENCODE-DCC / rna-seq-pipeline
  ☆153Updated 2 years ago
• xuzhougeng / org.Osativa.eg.db
  ☆20Updated 5 years ago
• BioOmics / iSeq
  Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.
  ☆205Updated 3 weeks ago
• menghaowei / ngstools
  My own tools code for NGS data analysis (Next Generation Sequencing)
  ☆30Updated 6 years ago
• OpenGene / scrnapip
  A Systematic and Dynamic Pipeline for Single-Cell RNA Sequencing Analysis
  ☆109Updated last year
• AmpliconSuite / AmpliconSuite-pipeline
  A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …
  ☆68Updated last month
• openbiox / bioinformatics-100-days
  Learn and practice the bioinformatics skills in 100 Days.
  ☆78Updated 5 years ago