Alternatives and similar repositories for handbook-cancer-genomics

Users that are interested in handbook-cancer-genomics are comparing it to the libraries listed below

• xuzhougeng / R-ChIP-data-analysis
  ☆50Updated 7 years ago
• XWangLabTHU / cfDNApipe
  cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data
  ☆74Updated 3 years ago
• al-mcintyre / merip_reanalysis_scripts
  Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq
  ☆51Updated 5 years ago
• xryanglab / RiboCode
  release version
  ☆54Updated 3 years ago
• pzweuj / pzweuj.github.io
  Go to
  ☆36Updated last week
• MonashBioinformaticsPlatform / RSeQC
  fork of RSeQC python RNAseq metrics suit of tools
  ☆49Updated 6 years ago
• jmzeng1314 / cnv
  ☆32Updated 7 years ago
• AAlhendi1707 / countToFPKM
  Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)
  ☆63Updated 4 years ago
• YangLab / CIRCexplorer2
  circular RNA analysis toolset
  ☆85Updated last year
• YuLab-SMU / createKEGGdb
  Create KEGG.db Package
  ☆62Updated 2 years ago
• AmpliconSuite / AmpliconSuite-pipeline
  A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …
  ☆74Updated last month
• best-practices-in-bioinformatics / basic
  ☆40Updated 8 years ago
• iprada / Circle-Map
  A method for circular DNA detection based on probabilistic mapping of ultrashort reads
  ☆66Updated last year
• Tong-Chen / NGS
  Scripts for next generation sequencing
  ☆49Updated 6 years ago
• tjbencomo / ngs-pipeline
  Pipeline for Somatic Variant Calling with WES and WGS data
  ☆24Updated last year
• canceromics / MeRIPseqPipe
  MeRIPseqPipe：An integrated analysis pipeline for MeRIP-seq data based on Nextflow.
  ☆42Updated last year
• scottzijiezhang / m6A-seq_analysis_workflow
  A pipeline to process m6A-seq data and down stream analysis.
  ☆45Updated 5 years ago
• zhxiaokang / RASflow
  RNA-Seq analysis workflow
  ☆105Updated 4 years ago
• 3UTR / DaPars2
  Dynamics analysis of Alternative PolyAdenylation from RNA-seq
  ☆63Updated 2 years ago
• shenmengyuan / RNA_seq_Biotrainee
  DEG analysis and KEGG/GO enrichment analysis
  ☆69Updated 7 years ago
• benben-miao / TOmicsVis
  Transcriptomics Visualization R package.
  ☆74Updated 7 months ago
• Tong-Chen / Bioinfo_course_R
  ☆38Updated 3 weeks ago
• openbiox / bioinformatics-100-days
  Learn and practice the bioinformatics skills in 100 Days.
  ☆78Updated 6 years ago
• ENCODE-DCC / hic-pipeline
  HiC uniform processing pipeline
  ☆61Updated 2 years ago
• ShujiaHuang / ilus
  A lightweight and handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysi…
  ☆140Updated 6 months ago
• ENCODE-DCC / rna-seq-pipeline
  ☆157Updated 3 years ago
• WGLab / dragonstar2019
  ☆136Updated 6 years ago
• QuKunLab / ATAC-pipe
  Analysis pipeline for ATAC-seq Data
  ☆62Updated 4 years ago
• TrinityCTAT / Trinity_CTAT
  ☆120Updated 2 years ago
• rajewsky-lab / mirdeep2
  Discovering known and novel miRNAs from small RNA sequencing data
  ☆154Updated last year