BKI-immuno / neoantigen-specific-T-cells-NSCLCView external linksLinks
☆19Oct 26, 2021Updated 4 years ago
Alternatives and similar repositories for neoantigen-specific-T-cells-NSCLC
Users that are interested in neoantigen-specific-T-cells-NSCLC are comparing it to the libraries listed below
Sorting:
- A collection of perl scripts for NGS analysis☆17Oct 2, 2024Updated last year
- ☆28Jan 15, 2024Updated 2 years ago
- code for data processing and visualisation associated with the stromal subclasses manuscript☆13Oct 30, 2020Updated 5 years ago
- ☆15Jan 28, 2023Updated 3 years ago
- A pan-cancer analysis of the microbiome in metastatic cancer (Battaglia et. al, Cell, 2024)☆14Apr 9, 2024Updated last year
- ☆13Feb 20, 2021Updated 4 years ago
- Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model☆14Oct 19, 2023Updated 2 years ago
- TRUST4 manuscript evaluation☆16Jul 8, 2022Updated 3 years ago
- ☆42Oct 12, 2018Updated 7 years ago
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆22Sep 28, 2021Updated 4 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆116Apr 26, 2025Updated 9 months ago
- Deconvolution of spatial transcriptomics at single-cell resolution☆20Sep 19, 2024Updated last year
- RAGE-seq scripts☆18Aug 30, 2021Updated 4 years ago
- ☆19Jun 16, 2023Updated 2 years ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆24Dec 21, 2022Updated 3 years ago
- ☆19Feb 23, 2022Updated 3 years ago
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆23Sep 30, 2022Updated 3 years ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆58Aug 17, 2024Updated last year
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆104Dec 18, 2025Updated last month
- ☆23Feb 24, 2025Updated 11 months ago
- PRedictor of IMmunogenic Epitopes☆25Sep 24, 2025Updated 4 months ago
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆180Feb 9, 2026Updated last week
- hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data☆13Jul 12, 2024Updated last year
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆27Oct 1, 2022Updated 3 years ago
- Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".☆126Sep 24, 2024Updated last year
- ☆62Jul 6, 2021Updated 4 years ago
- STHD: probabilistic cell typing of Single spots in whole Transcriptome spatial data with High Definition☆37Apr 30, 2025Updated 9 months ago
- R package for Pathway RespOnsive GENe activity inference☆114Jan 30, 2023Updated 3 years ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆63Mar 31, 2022Updated 3 years ago
- ☆129Apr 24, 2024Updated last year
- Predict mutated T-cell epitopes from sequencing data☆30Feb 18, 2025Updated 11 months ago
- Simplify functional enrichment results☆124Jan 30, 2026Updated 2 weeks ago
- ☆33Jul 17, 2021Updated 4 years ago
- TARDIS: Topological Algorithms for Robust DIscovery of Singularities☆44Jul 28, 2023Updated 2 years ago
- ☆32Aug 24, 2022Updated 3 years ago
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆31May 27, 2025Updated 8 months ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆78Jul 25, 2025Updated 6 months ago
- Vector representations of gene co-expression in single cell RNAseq.☆36Nov 8, 2025Updated 3 months ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆73Jul 26, 2018Updated 7 years ago