BKI-immuno / neoantigen-specific-T-cells-NSCLC
☆19Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for neoantigen-specific-T-cells-NSCLC
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆25Updated last month
- Aligning gene expression trajectories of single-cell reference and query systems☆46Updated last month
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆34Updated 9 months ago
- R package for pathway analysis in scRNA-seq data☆62Updated 3 months ago
- ☆37Updated 10 months ago
- Gene group activity utility functions for Scanpy☆56Updated 3 months ago
- ☆39Updated 3 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last month
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆20Updated last year
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆49Updated 2 months ago
- R implementation of GeneTrajectory☆50Updated 7 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆26Updated this week
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆28Updated this week
- Accurate and fast cell marker gene identification with COSG☆38Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated 8 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆36Updated 3 weeks ago
- ☆48Updated 4 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆31Updated 3 years ago
- ☆53Updated 10 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆33Updated 3 years ago
- Mosaic single cell data integration using non-overlapping features☆34Updated 2 years ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆15Updated last month
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆26Updated 4 months ago
- Functions for single cell data analysis☆27Updated 3 years ago
- scWGCNA☆55Updated 2 years ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆37Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆57Updated 5 months ago
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated last year
- ☆20Updated last year
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated 10 months ago