MannLabs / alphapeptLinks
A modular, python-based framework for mass spectrometry. Powered by nbdev.
☆185Updated last year
Alternatives and similar repositories for alphapept
Users that are interested in alphapept are comparing it to the libraries listed below
Sorting:
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆83Updated 2 months ago
- A collection of available Python tools for Proteomics analysis☆67Updated last week
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆92Updated 2 months ago
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆150Updated last week
- A list of tools on proteomics using deep learning☆106Updated last year
- Deep learning framework for proteomics☆145Updated last week
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆94Updated last week
- modular & open DIA search☆100Updated last week
- Community-curated tutorials and datasets for ML in proteomics☆57Updated 3 months ago
- DeepLC: Retention time prediction for peptides carrying any modification.☆73Updated 3 weeks ago
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆174Updated 2 weeks ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆60Updated last month
- Rescoring and spectral library generation pipeline for proteomics.☆53Updated last week
- This is a collection of minimal code to visualize various aspects of proteomics data.☆82Updated 4 years ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆127Updated 3 weeks ago
- Python package for efficient mass spectrometry data processing and visualization☆164Updated last month
- A deep learning toolkit for mass spectrometry☆87Updated last month
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆50Updated last week
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆101Updated last week
- Infrastructure of AlphaX ecosystem☆53Updated last week
- Python framework for Deep Learning in Proteomics☆38Updated last week
- Democratizing ML in proteomics☆52Updated last week
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆35Updated 9 months ago
- ☆45Updated 10 months ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆48Updated this week
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆62Updated 2 weeks ago
- BRAID is a department within Genentech dedicated to advancing biological and clinical sciences through artificial intelligence.☆219Updated 5 months ago
- Open-source C++ and Python module for opening binary timsTOF data files.☆50Updated 7 months ago
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆107Updated 2 weeks ago
- De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments☆112Updated last month