MannLabs / alphapeptLinks
A modular, python-based framework for mass spectrometry. Powered by nbdev.
☆176Updated last year
Alternatives and similar repositories for alphapept
Users that are interested in alphapept are comparing it to the libraries listed below
Sorting:
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆68Updated 2 weeks ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆82Updated 2 months ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆87Updated 2 months ago
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆128Updated 3 weeks ago
- Deep learning framework for proteomics☆127Updated last week
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆142Updated 2 weeks ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆79Updated 3 years ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆119Updated last month
- modular & open DIA search☆71Updated this week
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆56Updated last month
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆32Updated last month
- A list of tools on proteomics using deep learning☆96Updated last year
- Community-curated tutorials and datasets for ML in proteomics☆54Updated 2 months ago
- Rescoring and spectral library generation pipeline for proteomics.☆43Updated last week
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆64Updated last month
- A collection of available Python tools for Proteomics analysis☆56Updated 6 years ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆87Updated last month
- Instrument Application Programming Interface☆47Updated 3 months ago
- Open-source C++ and Python module for opening binary timsTOF data files.☆48Updated 2 weeks ago
- Democratizing ML in proteomics☆37Updated 2 weeks ago
- A deep learning toolkit for mass spectrometry☆77Updated 10 months ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆43Updated 2 months ago
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆86Updated last year
- Universal Deconvolution of Mass and Ion Mobility Spectra☆70Updated 2 weeks ago
- An open-source Python package for dia-PASEF methods with Automated Isolation Design (py_diAID) from the Mann Labs at the Max Planck Inst…☆21Updated this week
- DIA-NN - a universal automated software suite for DIA proteomics data analysis.☆346Updated last week
- Python package for efficient mass spectrometry data processing and visualization☆148Updated 2 months ago
- Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.☆214Updated last week
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆64Updated last year
- ☆14Updated 4 years ago