A modular, python-based framework for mass spectrometry. Powered by nbdev.
☆192Apr 19, 2024Updated 2 years ago
Alternatives and similar repositories for alphapept
Users that are interested in alphapept are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆94Nov 17, 2025Updated 10 months ago
- Proteomics search & quantification so fast that it feels like magic☆309Updated this week
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆62Jul 15, 2026Updated 2 months ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆98Jun 3, 2026Updated 3 months ago
- modular & open DIA search☆115Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆90Nov 21, 2025Updated 10 months ago
- Deep learning framework for proteomics☆158Aug 31, 2026Updated 3 weeks ago
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆40Jun 3, 2026Updated 3 months ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆87Jan 6, 2022Updated 4 years ago
- ☆38Sep 11, 2026Updated last week
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆131Mar 23, 2026Updated 5 months ago
- An open-source Python package to unify raw MS data accession and storage.☆35Aug 31, 2026Updated 3 weeks ago
- Infrastructure of AlphaX ecosystem☆59Updated this week
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆57Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Python package for investigating the structural context of PTMs☆28Jan 9, 2025Updated last year
- An open-source Python package for dia-PASEF methods with Automated Isolation Design (py_diAID) from the Mann Labs at the Max Planck Inst…☆31Mar 19, 2026Updated 6 months ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆50Jul 13, 2026Updated 2 months ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆31Jul 16, 2026Updated 2 months ago
- An open-source Python package for accurate and sensitive peptide and protein quantification.☆21Aug 21, 2026Updated last month
- Top down / bottom up, MS/MS analysis tool for DDA and DIA mass spectrometry data☆32Oct 5, 2022Updated 3 years ago
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆160Updated this week
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆25Sep 7, 2026Updated 2 weeks ago
- 🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data☆39Jun 10, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Read/write functions to and from spatialdata for Deep Visual Proteomics☆20Sep 1, 2026Updated 3 weeks ago
- A deep learning toolkit for mass spectrometry☆96Aug 16, 2026Updated last month
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆130Sep 14, 2026Updated last week
- DIA-NN - a universal automated software suite for DIA proteomics data analysis.☆478Sep 16, 2026Updated last week
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆109Updated this week
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆34Mar 21, 2026Updated 6 months ago
- EasyPQP: Simple library generation for OpenSWATH☆11Apr 21, 2026Updated 5 months ago
- Spectral library searching using approximate nearest neighbor techniques.☆51Feb 11, 2026Updated 7 months ago
- Open-source C++ and Python module for opening binary timsTOF data files.☆49Sep 7, 2026Updated 2 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆91Aug 17, 2023Updated 3 years ago
- ☆15Jan 27, 2022Updated 4 years ago
- Using deep learning to generate in silico spectral libraries for data-independent acquisition analysis.☆42Oct 23, 2022Updated 3 years ago
- Feature finding algorithm for detection of isotope patterns in HPLC mass spectrometry data.☆45Jun 27, 2022Updated 4 years ago
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆249Jul 8, 2026Updated 2 months ago
- Group-DIA, a software for analyzing multiple DIA data files☆13Dec 5, 2016Updated 9 years ago
- MS/MS prediction for peptides☆25Dec 18, 2020Updated 5 years ago