symbioticMe / proBatchLinks
Tools for Batch Effects Diagnostics and Correction
☆17Updated 9 months ago
Alternatives and similar repositories for proBatch
Users that are interested in proBatch are comparing it to the libraries listed below
Sorting:
- Methods for label-free mass spectrometry proteomics☆15Updated 10 months ago
- Using R and Bioconductor packages for the analysis and comprehension of proteomics data.☆99Updated 5 months ago
- R package - MSstats☆90Updated last week
- R package for analysing proteomics data☆50Updated 2 years ago
- An S3 data object and framework for common quantitative proteomic analyses☆47Updated last month
- Olink R package: A collection of functions to facilitate analysis of proteomic data from Olink. The goal of this package is to help users…☆124Updated this week
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆65Updated 2 months ago
- An R interface to enrichR☆94Updated last year
- Imputation of missing values of a matrix or data.frame using iterative prediction model☆36Updated 11 months ago
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆38Updated last month
- Mass spectrometry imaging toolbox☆69Updated 3 months ago
- DEP package☆30Updated 3 years ago
- LIMMA (an empirical Bayes method) pipeline for two group comparison in a proteomic experiment☆29Updated 2 years ago
- Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/☆22Updated 2 years ago
- Tools for manipulating annotated data matrices☆93Updated 4 years ago
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆29Updated 6 months ago
- R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis☆32Updated 2 weeks ago
- The repo for LFQ-Analyst☆30Updated last year
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆111Updated 5 years ago
- NAguideR: performing and prioritizing missing value imputations for consistent bottom-up proteomic analyses☆51Updated 5 months ago
- MS-DAP: downstream analysis pipeline for quantitative proteomics☆40Updated 2 weeks ago
- CAusal Reasoning for Network Identification with integer VALue programming in R☆61Updated 2 years ago
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆54Updated last year
- tidymass☆60Updated 2 weeks ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆125Updated 9 months ago
- Differential Expression Analysis tool box R lang package for omics data☆47Updated last month
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆84Updated 2 years ago
- ☆69Updated last year
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 7 years ago
- Documentation for the limpa Bioconductor package, which implements quantification and differential analysis of mass-spectrometry proteomi…☆20Updated this week