symbioticMe / proBatchLinks
Tools for Batch Effects Diagnostics and Correction
☆16Updated last month
Alternatives and similar repositories for proBatch
Users that are interested in proBatch are comparing it to the libraries listed below
Sorting:
- An S3 data object and framework for common quantitative proteomic analyses☆41Updated last week
- R package for analysing proteomics data☆49Updated 2 years ago
- Differential Expression Analysis tool box R lang package for omics data☆45Updated last week
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆29Updated 3 months ago
- Methods for label-free mass spectrometry proteomics☆15Updated 2 months ago
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆37Updated last week
- DEqMS is a tool for quantitative proteomic analysis☆23Updated last month
- Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/☆20Updated last year
- The repo for LFQ-Analyst☆30Updated 9 months ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆61Updated 2 months ago
- DEP package☆28Updated 2 years ago
- R package - MSstats☆83Updated last week
- Mass spectrometry imaging toolbox☆58Updated 5 months ago
- Imputation of missing values of a matrix or data.frame using iterative prediction model☆33Updated 3 months ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆48Updated 2 weeks ago
- LIMMA (an empirical Bayes method) pipeline for two group comparison in a proteomic experiment☆26Updated last year
- A tool for large scale omics datasets evaluation☆25Updated last year
- Using R and Bioconductor packages for the analysis and comprehension of proteomics data.☆93Updated 2 years ago
- Quantitative features for mass spectrometry data☆27Updated last week
- tidymass☆54Updated 3 weeks ago
- Proteomics Toolset for Integrative Data Analysis☆22Updated last month
- MS-DAP: downstream analysis pipeline for quantitative proteomics☆39Updated 3 months ago
- An r package for proteomics data Analysis, developed from DEP.☆29Updated 2 months ago
- Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.☆23Updated 7 months ago
- R package for functionally scoring phosphorylation sites☆19Updated 5 years ago
- Robust statistical inference for quantitative LC-MS proteomics☆33Updated 2 years ago
- Absolute quantification package based on quantms.io☆14Updated 3 weeks ago
- Picotti lab data analysis package.☆63Updated last month
- Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.☆22Updated 3 years ago
- Documentation is available here:☆17Updated last week