Tools for Batch Effects Diagnostics and Correction
☆17Apr 25, 2025Updated last year
Alternatives and similar repositories for proBatch
Users that are interested in proBatch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.☆22May 27, 2022Updated 4 years ago
- ☆17Jul 18, 2022Updated 4 years ago
- Utilities for downloading and managing protein FASTA files.☆14Mar 20, 2024Updated 2 years ago
- A Bioconductor/R package for longitudinal system suitability monitoring and quality control for proteomic experiments☆10Feb 7, 2026Updated 5 months ago
- Kinase-Substrate Enrichment Analysis (KSEA) App☆10May 2, 2017Updated 9 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆34Mar 21, 2026Updated 4 months ago
- A tool for large scale omics datasets evaluation☆24Jun 14, 2023Updated 3 years ago
- DEqMS is a tool for quantitative proteomic analysis☆29Apr 16, 2025Updated last year
- Tutorials as used in the user meetings. (Please assign a git tag for the revision used for the UM)☆13May 20, 2025Updated last year
- PhosR is a package for the comprehensive analysis of phosphoproteomic data.☆20Jun 8, 2026Updated last month
- A toolkit for optimal workflow recommendation for proteomics data differential expression analysis☆20Oct 10, 2024Updated last year
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆31Updated this week
- Tunable Approach for Median Polish of Ratio -- Biological Abundance Batch Effect Removal☆37May 27, 2025Updated last year
- A Comet-based, best practices proteomics pipeline.☆40Mar 21, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python library for analyzing mass spectrometry proteomics data.☆15Mar 20, 2024Updated 2 years ago
- Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.☆26Apr 22, 2026Updated 3 months ago
- ☆11Updated this week
- A DL-based framework for sequence and shape motif identification in the human genome☆12May 26, 2023Updated 3 years ago
- a streamlining post Spectronaut™ DIA-MS data analysis R package☆15Jun 1, 2026Updated last month
- The pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of ma…☆48Feb 6, 2026Updated 5 months ago
- An introductory course to eQTL analysis.☆10Jul 11, 2025Updated last year
- Documentation for the limpa Bioconductor package, which implements quantification and differential analysis of mass-spectrometry proteomi…☆22Mar 25, 2026Updated 4 months ago
- PIA - Protein Inference Algorithms☆25Jul 15, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆14Apr 4, 2023Updated 3 years ago
- Implementation of the AIControl paper in Julia 1.0☆17Mar 4, 2019Updated 7 years ago
- MethodsJ2☆14May 6, 2022Updated 4 years ago
- Particle Swarm Optimization algorithm in Python☆14Apr 23, 2024Updated 2 years ago
- Read popular mass spectrometry formats☆10Sep 9, 2025Updated 10 months ago
- Spatiotemporal Clustering and Inference of Omics Networks (SC-ION)☆12Oct 24, 2024Updated last year
- ☆14Jul 30, 2018Updated 7 years ago
- DEP package☆33Sep 28, 2022Updated 3 years ago
- Proteomic Data Analysis with Python (pandas, scikit-learn, numpy, scipy)☆24Jul 6, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Parameter estimation and model calibration using Genetic Algorithm optimization in Python.☆12Aug 16, 2024Updated last year
- Fast, parallelized implementation of Principal Component Analysis with constant memory consumption for large data sets.☆12Feb 18, 2022Updated 4 years ago
- Knowledge-Graph-UI (KG-UI) is an open-source web-based user interface built for KGs stored in Neo4j. The UI features Cypher queries for v…☆22Feb 18, 2026Updated 5 months ago
- Handmade ImageJ / Fiji LUTs for microscopy, scientific good visualization and art.☆14Jan 9, 2025Updated last year
- Navigation links (and brief descriptions) to my repositories.☆13Nov 25, 2025Updated 7 months ago
- Microbiome profiling☆15Nov 20, 2025Updated 8 months ago
- R Package for Systematic Optimization of Metabolomic Data Processing☆17Apr 4, 2025Updated last year