Tools for Batch Effects Diagnostics and Correction
☆17Apr 25, 2025Updated last year
Alternatives and similar repositories for proBatch
Users that are interested in proBatch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An exploration of internal reference scaling (IRS) normalization in isobaric tagging proteomics experiments.☆17Aug 6, 2019Updated 6 years ago
- Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.☆22May 27, 2022Updated 4 years ago
- Utilities for downloading and managing protein FASTA files.☆14Mar 20, 2024Updated 2 years ago
- A Bioconductor/R package for longitudinal system suitability monitoring and quality control for proteomic experiments☆10Feb 7, 2026Updated 4 months ago
- ☆17Jul 18, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Kinase-Substrate Enrichment Analysis (KSEA) App☆10May 2, 2017Updated 9 years ago
- DEqMS is a tool for quantitative proteomic analysis☆26Apr 16, 2025Updated last year
- Tutorials as used in the user meetings. (Please assign a git tag for the revision used for the UM)☆13May 20, 2025Updated last year
- A tool for large scale omics datasets evaluation☆24Jun 14, 2023Updated 3 years ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆33Mar 21, 2026Updated 2 months ago
- A toolkit for optimal workflow recommendation for proteomics data differential expression analysis☆20Oct 10, 2024Updated last year
- Documentation for the limpa Bioconductor package, which implements quantification and differential analysis of mass-spectrometry proteomi…☆20Mar 25, 2026Updated 2 months ago
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆31Apr 16, 2026Updated last month
- Tunable Approach for Median Polish of Ratio -- Biological Abundance Batch Effect Removal☆36May 27, 2025Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Python library for analyzing mass spectrometry proteomics data.☆15Mar 20, 2024Updated 2 years ago
- PhosR is a package for the comprehensive analysis of phosphoproteomic data.☆20Updated this week
- Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.☆26Apr 22, 2026Updated last month
- SODECL is a library of ordinary differential equation (ODE) and stochastic differential equation (SDE) solvers in OpenCL.☆11Jul 4, 2020Updated 5 years ago
- A Comet-based, best practices proteomics pipeline.☆39Mar 21, 2024Updated 2 years ago
- DEP package☆31Sep 28, 2022Updated 3 years ago
- A DL-based framework for sequence and shape motif identification in the human genome☆12May 26, 2023Updated 3 years ago
- Automated ingestion and conversion of various single-cell data formats, within and across species☆15Jan 26, 2026Updated 4 months ago
- An introductory course to eQTL analysis.☆10Jul 11, 2025Updated 11 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆11Jun 2, 2026Updated last week
- PIA - Protein Inference Algorithms☆25May 26, 2026Updated 2 weeks ago
- MethodsJ2☆14May 6, 2022Updated 4 years ago
- Implementation of the AIControl paper in Julia 1.0☆17Mar 4, 2019Updated 7 years ago
- NAguideR: performing and prioritizing missing value imputations for consistent bottom-up proteomic analyses☆52Aug 12, 2025Updated 10 months ago
- Unified access to several second-generation deconvolution methods☆103Jun 3, 2026Updated last week
- ☆13Jul 30, 2018Updated 7 years ago
- Knowledge-Graph-UI (KG-UI) is an open-source web-based user interface built for KGs stored in Neo4j. The UI features Cypher queries for v…☆21Feb 18, 2026Updated 3 months ago
- Genome scale metabolic models in SBML format☆11Nov 16, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Proteomic Data Analysis with Python (pandas, scikit-learn, numpy, scipy)☆24Jul 6, 2023Updated 2 years ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆45Apr 23, 2026Updated last month
- Parameter estimation and model calibration using Genetic Algorithm optimization in Python.☆12Aug 16, 2024Updated last year
- ☆14Apr 4, 2023Updated 3 years ago
- Handmade ImageJ / Fiji LUTs for microscopy, scientific good visualization and art.☆14Jan 9, 2025Updated last year
- Fast, parallelized implementation of Principal Component Analysis with constant memory consumption for large data sets.☆12Feb 18, 2022Updated 4 years ago
- DeepTM: A deep learning setup for prediction of transmembrane proteins☆16Jan 2, 2018Updated 8 years ago