Alternatives and similar repositories for cRomppass

Users that are interested in cRomppass are comparing it to the libraries listed below

• wenbostar / PDV
  PDV: an integrative proteomics data viewer
  ☆59Updated 6 months ago
• MSGFPlus / msgfplus
  MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …
  ☆83Updated 3 months ago
• pwilmart / TMT_analysis_examples
  Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.
  ☆22Updated 3 years ago
• Nesvilab / MSFragger
  Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
  ☆126Updated 2 weeks ago
• MannLabs / alphamap
  An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
  ☆92Updated 2 months ago
• Nesvilab / philosopher
  PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering
  ☆123Updated last month
• ftwkoopmans / msdap
  MS-DAP: downstream analysis pipeline for quantitative proteomics
  ☆40Updated 11 months ago
• vdemichev / diann-rpackage
  Report processing and protein quantification for MS-based proteomics
  ☆52Updated 2 years ago
• MannLabs / ProteomicsVisualization
  This is a collection of minimal code to visualize various aspects of proteomics data.
  ☆82Updated 4 years ago
• PayneLab / ProteomicsEducation
  ☆40Updated last week
• antigenomics / vdjdb-db
  🗂️ [vdjdb.com is up and running!] Git-based TCR database storage & management. Submissions welcome!
  ☆150Updated last month
• phbradley / tcr-dist
  Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)
  ☆86Updated 4 years ago
• bigbio / proteomics-sample-metadata
  The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
  ☆100Updated last week
• lkytal / PepNet
  The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra
  ☆39Updated last year
• LiChenPU / NetID
  A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery
  ☆51Updated 2 years ago
• Nesvilab / FragPipe
  A cross-platform proteomics data analysis suite
  ☆275Updated this week
• bigbio / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆65Updated last week
• IFIproteomics / LFQbench
  ☆24Updated 2 years ago
• Vitek-Lab / MSstats
  R package - MSstats
  ☆89Updated last week
• immunoengineer / gliph
  Grouping of Lymphocyte Interactions by Paratope Hotspots
  ☆96Updated 5 years ago
• broadinstitute / depmap_omics
  What you need to process the Quarterly DepMap-Omics releases from Terra
  ☆125Updated last week
• RasmussenLab / pimms
  Imputing proteomics data using deep learning models
  ☆31Updated 2 months ago
• MonashProteomics / FragPipe-Analyst
  Documentation is available here:
  ☆23Updated last month
• tvpham / iq
  An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics
  ☆32Updated last week
• MannLabs / alphabase
  Infrastructure of AlphaX ecosystem
  ☆53Updated this week
• pFindStudio / pFind3
  ☆28Updated 3 weeks ago
• bigbio / ibaqpy
  Absolute quantification package based on quantms.io
  ☆16Updated 4 months ago
• MannLabs / directlfq
  Fast and accurate label-free quantification for small and very large numbers of proteomes
  ☆60Updated 3 weeks ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆46Updated 2 years ago
• broadinstitute / PANOPLY
  Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…
  ☆37Updated last month