dnusinow / cRomppass
Score an Affinity Purification Mass Spectrometry Proteomics Experiment for Interactor Confidence
☆10Updated 9 years ago
Alternatives and similar repositories for cRomppass:
Users that are interested in cRomppass are comparing it to the libraries listed below
- Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.☆21Updated 2 years ago
- R package for analysing proteomics data☆49Updated last year
- ☆26Updated 2 months ago
- ☆17Updated last month
- DEqMS is a tool for quantitative proteomic analysis☆23Updated 3 months ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆79Updated last year
- ☆24Updated 2 years ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆59Updated 2 weeks ago
- R package - MSstats☆80Updated last week
- Absolute quantification package based on quantms.io☆13Updated last month
- MS-DAP: downstream analysis pipeline for quantitative proteomics☆34Updated last month
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆34Updated this week
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆33Updated 10 months ago
- R package for functionally scoring phosphorylation sites☆19Updated 5 years ago
- The repo for LFQ-Analyst☆29Updated 7 months ago
- A Comprehensive R Package For Analyzing Quantitative Phosphoproteomics Data☆12Updated 2 years ago
- Differential Expression Analysis tool box R lang package for omics data☆44Updated last week
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso …☆41Updated this week
- PDV: an integrative proteomics data viewer☆45Updated 2 months ago
- tidymass☆54Updated last year
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆26Updated 6 years ago
- DIABLO - an integrative multi-group, multi-dataset classification method☆22Updated 6 years ago
- ☆55Updated 3 years ago
- De novo peptide sequencing for DDA and DIA by deep learning☆32Updated 4 years ago
- CLUMPS adapted to post-translational modifications.☆9Updated last year
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆49Updated 5 years ago
- The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra☆35Updated 4 months ago
- python scripts for proteogenomics analysis☆10Updated 5 years ago
- Imputation of missing values of a matrix or data.frame using iterative prediction model☆32Updated 3 weeks ago
- Integration ribosome profiling - mass spectrometry☆14Updated 2 weeks ago