dnusinow / cRomppassLinks
Score an Affinity Purification Mass Spectrometry Proteomics Experiment for Interactor Confidence
☆11Updated 10 years ago
Alternatives and similar repositories for cRomppass
Users that are interested in cRomppass are comparing it to the libraries listed below
Sorting:
- Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.☆22Updated 3 years ago
- Report processing and protein quantification for MS-based proteomics☆49Updated 2 years ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆121Updated 3 months ago
- PDV: an integrative proteomics data viewer☆55Updated 3 months ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆81Updated this week
- What you need to process the Quarterly DepMap-Omics releases from Terra☆124Updated last month
- 🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!☆145Updated 2 weeks ago
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆119Updated last month
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆62Updated 4 years ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆59Updated last week
- Documentation is available here:☆18Updated last week
- The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra☆39Updated 11 months ago
- A cross-platform proteomics data analysis suite☆261Updated this week
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆97Updated 4 years ago
- ☆28Updated 9 months ago
- MS-DAP: downstream analysis pipeline for quantitative proteomics☆39Updated 7 months ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆86Updated 2 months ago
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆102Updated this week
- ☆24Updated 2 years ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆86Updated 4 years ago
- HLA-II ligand predictor.☆45Updated 2 years ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆31Updated last week
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆36Updated last year
- This is a collection of minimal code to visualize various aspects of proteomics data.☆83Updated 3 years ago
- ☆35Updated 3 months ago
- A list of tools on proteomics using deep learning☆106Updated last year
- Absolute quantification package based on quantms.io☆16Updated last month
- Package to Score Sequences using Rule Set 3☆12Updated last month
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆34Updated 3 years ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆96Updated last month