medbioinf / pia
PIA - Protein Inference Algorithms
☆22Updated 3 months ago
Alternatives and similar repositories for pia:
Users that are interested in pia are comparing it to the libraries listed below
- mzTab Reporting MS-based Proteomics and Metabolomics Results☆42Updated 2 weeks ago
- A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant☆42Updated 3 months ago
- PDV: an integrative proteomics data viewer☆46Updated last week
- A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file☆33Updated 3 years ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆43Updated last month
- A Python interface to proteomics data repositories☆34Updated last month
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆22Updated last week
- ☆13Updated last year
- ☆58Updated 11 months ago
- Some hopefully useful tools for mass spectrometry applied to proteomics☆52Updated 3 years ago
- Using R and Bioconductor packages for the analysis and comprehension of proteomics data.☆94Updated last year
- R package - MSstats☆81Updated this week
- pathway and network analysis for metabolomics☆40Updated 10 months ago
- MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics☆14Updated 2 years ago
- The pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of ma…☆41Updated this week
- This is the git repository matching the Bioconductor package mzR: parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data…☆45Updated 2 months ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆84Updated this week
- Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package☆36Updated 11 months ago
- Computational analysis for mass spectrometry-based proteomics data☆20Updated last year
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆26Updated 6 years ago
- Robust statistical inference for quantitative LC-MS proteomics☆33Updated 2 years ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆42Updated this week
- Quantitative features for mass spectrometry data☆27Updated 2 weeks ago
- Core Utils for Mass Spectrometry Data☆16Updated 3 weeks ago
- Differential Expression Analysis tool box R lang package for omics data☆44Updated 2 weeks ago
- Interpretation of proteomics identification results☆48Updated last week
- Absolute quantification package based on quantms.io☆13Updated 2 months ago
- Chemical Similarity Enrichment analysis of metabolomics datasets☆28Updated 8 months ago
- Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.☆27Updated last year
- Reporting and exchange format for mass spectrometry quality control data☆31Updated last week