Alternatives and similar repositories for pia:

Users that are interested in pia are comparing it to the libraries listed below

• HUPO-PSI / mzTab
  mzTab Reporting MS-based Proteomics and Metabolomics Results
  ☆41Updated this week
• cbielow / PTXQC
  A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant
  ☆42Updated 2 months ago
• bigbio / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆41Updated this week
• rformassspectrometry / MsCoreUtils
  Core Utils for Mass Spectrometry Data
  ☆16Updated last week
• compomics / moFF
  A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file
  ☆33Updated 3 years ago
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆34Updated 3 weeks ago
• wenbostar / PDV
  PDV: an integrative proteomics data viewer
  ☆45Updated 2 months ago
• statisticalbiotechnology / triqler
  The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code
  ☆21Updated 2 weeks ago
• msproteomicstools / msproteomicstools
  Some hopefully useful tools for mass spectrometry applied to proteomics
  ☆52Updated 3 years ago
• barupal / ChemRICH
  Chemical Similarity Enrichment analysis of metabolomics datasets
  ☆27Updated 8 months ago
• vsegurar / DeepMSPeptide
  ☆16Updated 5 years ago
• bigbio / proteomics-sample-metadata
  The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
  ☆80Updated this week
• workflow4metabolomics / tools-metabolomics
  Galaxy tools for metabolomics maintained by Workflow4Metabolomics
  ☆27Updated last month
• ursgal / ursgal
  Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis
  ☆41Updated 2 weeks ago
• compomics / peptide-shaker
  Interpretation of proteomics identification results
  ☆48Updated 3 months ago
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆43Updated last month
• fgcz / prolfqua
  Differential Expression Analysis tool box R lang package for omics data
  ☆44Updated this week
• sneumann / mzR
  This is the git repository matching the Bioconductor package mzR: parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data…
  ☆45Updated last month
• Vitek-Lab / MSstatsTMT
  R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …
  ☆28Updated 3 weeks ago
• jessegmeyerlab / proteomics-tutorial
  ☆58Updated 10 months ago
• statisticalbiotechnology / diffacto
  ☆13Updated last year
• kentsisresearchgroup / UltraQuant
  MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters
  ☆26Updated 6 years ago
• eugenemel / maven
  Maven GUI: Metabolomics Analysis and Visualization Engine
  ☆19Updated 2 months ago
• fgcz / rawDiag
  Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package
  ☆36Updated 11 months ago
• MarcIsak / MSLibrarian
  MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics
  ☆14Updated 2 years ago
• stanstrup / commonMZ
  A collection of common mz values found in mass spectrometry.
  ☆19Updated 9 months ago
• Nesvilab / DIA-Umpire
  Computational analysis for mass spectrometry-based proteomics data
  ☆20Updated last year
• Viant-Metabolomics / Galaxy-M
  Metabolomics Tools for Galaxy
  ☆21Updated 8 years ago
• statOmics / MSqRob
  Robust statistical inference for quantitative LC-MS proteomics
  ☆33Updated 2 years ago
• shuzhao-li / mummichog
  pathway and network analysis for metabolomics
  ☆40Updated 10 months ago