coongroup / IPSA
The Interactive Peptide Spectral Annotator
☆18Updated 4 years ago
Alternatives and similar repositories for IPSA
Users that are interested in IPSA are comparing it to the libraries listed below
Sorting:
- A python package for fast post translational modification localization, powered by Cython.☆19Updated last year
- Python package for investigating the structural context of PTMs☆28Updated 4 months ago
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆24Updated last month
- A Python interface to proteomics data repositories☆34Updated 2 months ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆43Updated 2 months ago
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆25Updated 5 months ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆46Updated this week
- Data Processing Kitchen Sink for proteomics data☆11Updated this week
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆20Updated 3 weeks ago
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆18Updated last week
- ☆24Updated 2 years ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆27Updated 3 weeks ago
- Analysis of co-fractionation MS datasets☆11Updated 3 years ago
- Differential Expression Analysis tool box R lang package for omics data☆45Updated this week
- TimsR: Easy access to timsTOF Pro data from R.☆10Updated 4 years ago
- QUANtification by Distillation for ENhanced Signals with Error Regulation☆10Updated 2 years ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆43Updated 2 months ago
- MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics☆14Updated 2 years ago
- Python client for PRIDE Archive Rest API.☆23Updated 3 weeks ago
- A label free quantification tool.☆17Updated this week
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆30Updated 2 months ago
- ☆10Updated last year
- ☆13Updated last year
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆45Updated this week
- ☆26Updated 2 weeks ago
- A simple tool to help you manually discover the depths of your (complex) spectra, one spectrum at a time.☆26Updated 2 weeks ago
- MS/MS prediction for peptides☆22Updated 4 years ago
- A library for QC report based on MultiQC framework☆14Updated this week
- Democratizing ML in proteomics☆37Updated last week
- Spectral library searching using approximate nearest neighbor techniques.☆42Updated last week