broadinstitute / protigy
Proteomics Toolset for Integrative Data Analysis
☆22Updated 2 weeks ago
Alternatives and similar repositories for protigy:
Users that are interested in protigy are comparing it to the libraries listed below
- An S3 data object and framework for common quantitative proteomic analyses☆40Updated 2 months ago
- R package for analysing proteomics data☆49Updated 2 years ago
- DEP package☆28Updated 2 years ago
- Cancer Dependency Map package☆29Updated 8 months ago
- A tool for large scale omics datasets evaluation☆24Updated last year
- ☆17Updated 4 months ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆61Updated last month
- DEqMS is a tool for quantitative proteomic analysis☆23Updated this week
- Quantitative features for mass spectrometry data☆27Updated 3 weeks ago
- A shiny-based web tool for interactive analysis of DepMap data☆23Updated 4 years ago
- rbioapi: User-Friendly R Interface to Biologic Web Services' API☆22Updated 2 months ago
- The repo for LFQ-Analyst☆30Updated 8 months ago
- R package for easy interop between Perseus and R☆14Updated 2 years ago
- Genoppi: an open-source software for robust and standardized integration of proteomic and genetic data☆26Updated 11 months ago
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆35Updated last week
- Differential Expression Analysis tool box R lang package for omics data☆44Updated 3 weeks ago
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆23Updated 4 years ago
- ☆24Updated 2 years ago
- R-Shiny GUI integrated with the MSstats package family☆15Updated 2 months ago
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆26Updated 6 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆49Updated 5 years ago
- Methods for label-free mass spectrometry proteomics☆14Updated 3 weeks ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆17Updated last week
- Quick access to gene synonyms☆27Updated this week
- Automated quantitative analysis of DIA proteomics mass spectrometry measurements.☆18Updated 3 months ago
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆22Updated 2 months ago
- Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.☆23Updated 6 months ago
- An r package for proteomics data Analysis, developed from DEP.☆29Updated last month
- tidymass☆54Updated last year
- An R package to plot interactive three-way differential expression analysis☆37Updated last year