singjc / redeemLinks
Repository for Deep Learning Models for Mass Spectrometry written in Rust
☆14Updated 2 weeks ago
Alternatives and similar repositories for redeem
Users that are interested in redeem are comparing it to the libraries listed below
Sorting:
- A simple tool to help you manually discover the depths of your (complex) spectra, one spectrum at a time.☆32Updated last month
- A Rust library for peptide centric mass spec calculations centered around PSI standards and handling complex cases robustly☆39Updated last month
- ☆27Updated 7 months ago
- ☆31Updated last month
- A CLI for pairwise alignment of sequences, using both normal and mass based alignment.☆14Updated last month
- Spectral library searching using approximate nearest neighbor techniques.☆48Updated 8 months ago
- A Python interface to proteomics data repositories☆36Updated 7 months ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆49Updated 10 months ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆50Updated this week
- Ms2 basEd saMple vectOrization (memo) package☆17Updated 2 years ago
- Metabolic In silico Network Expansion (MINE) Database Construction and DB Logic☆20Updated last year
- Estimation of false discovery proportion for mass spectrometry proteomics data using entrapment☆23Updated 3 months ago
- ☆38Updated this week
- A python package for fast post translational modification localization, powered by Cython.☆20Updated 2 years ago
- Python package for processing direct-infusion mass spectrometry-based metabolomics and lipidomics data☆21Updated 2 years ago
- ☆15Updated 7 months ago
- Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.☆33Updated 2 months ago
- High quality in silico spectral library generation for data-independent acquisition proteomics☆16Updated 2 months ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆53Updated last week
- Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry da…☆29Updated 3 years ago
- Instrument Application Programming Interface☆51Updated 3 months ago
- Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments☆13Updated 7 months ago
- This repository attempts to implement a neural net that leverages the transformer architecture to predict peptide properties (retention t…☆11Updated last year
- C++ lossless and lossy mass spectrometry compression☆13Updated 4 years ago
- The Mass Spec Query Language (MassQL) is a domain specific language meant to be a succinct way to express a query in a mass spectrometry …☆55Updated last month
- Data Processing Kitchen Sink for proteomics data☆13Updated last week
- The Interactive Peptide Spectral Annotator☆20Updated 5 years ago
- Python client for PRIDE Archive Rest API.☆29Updated 3 weeks ago
- MS/MS prediction for peptides☆24Updated 5 years ago
- ☆44Updated 10 months ago