singjc / redeemLinks
Repository for Deep Learning Models for Mass Spectrometry written in Rust
☆14Updated last month
Alternatives and similar repositories for redeem
Users that are interested in redeem are comparing it to the libraries listed below
Sorting:
- A simple tool to help you manually discover the depths of your (complex) spectra, one spectrum at a time.☆26Updated last week
- A Rust library for peptide centric mass spec calculations centered around ProForma and complex theoretical fragmentation☆32Updated this week
- ☆28Updated 2 weeks ago
- ☆27Updated last month
- Spectral library searching using approximate nearest neighbor techniques.☆43Updated 2 months ago
- A Python interface to proteomics data repositories☆34Updated 3 weeks ago
- Estimation of false discovery proportion for mass spectrometry proteomics data using entrapment☆16Updated this week
- A CLI for pairwise alignment of sequences, using both normal and mass based alignment.☆13Updated 3 weeks ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆46Updated this week
- Fast and flexible semi-supervised learning for peptide detection in Python☆47Updated 4 months ago
- Ms2 basEd saMple vectOrization (memo) package☆17Updated 2 years ago
- Metabolic In silico Network Expansion (MINE) Database Construction and DB Logic☆19Updated last year
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆51Updated 2 weeks ago
- Python client for PRIDE Archive Rest API.☆24Updated 3 months ago
- Python package for processing direct-infusion mass spectrometry-based metabolomics and lipidomics data☆20Updated 2 years ago
- EuBIC-MS Developers Meeting 2025 on Computational Mass Spectrometry☆11Updated 8 months ago
- Data Processing Kitchen Sink for proteomics data☆11Updated 2 months ago
- ☆19Updated this week
- ☆38Updated 4 months ago
- Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.☆32Updated 2 months ago
- This repository attempts to implement a neural net that leverages the transformer architecture to predict peptide properties (retention t…☆10Updated 7 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆51Updated last month
- PIA - Protein Inference Algorithms☆24Updated last week
- MS/MS prediction for peptides☆23Updated 4 years ago
- Python framework for Deep Learning in Proteomics☆27Updated last month
- Community-curated tutorials and datasets for ML in proteomics☆54Updated 3 months ago
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆24Updated last month
- Computational analysis for mass spectrometry-based proteomics data☆20Updated last month
- HUPO-PSI Standardized peptidoform notation☆19Updated 2 months ago
- A python package for fast post translational modification localization, powered by Cython.☆19Updated last year