Alternatives and similar repositories for redeem

Users that are interested in redeem are comparing it to the libraries listed below

• rusteomics / mzcore
  A Rust library for peptide centric mass spec calculations centered around ProForma and complex theoretical fragmentation
  ☆28Updated this week
• snijderlab / annotator
  A simple tool to help you manually discover the depths of your (complex) spectra, one spectrum at a time.
  ☆26Updated this week
• MannLabs / timsrust
  ☆26Updated 2 weeks ago
• mobiusklein / mzdata
  ☆28Updated last week
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆34Updated 2 months ago
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆44Updated 3 months ago
• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆46Updated this week
• bittremieux-lab / ANN-SoLo
  Spectral library searching using approximate nearest neighbor techniques.
  ☆43Updated last month
• nwamsley1 / Pioneer.jl
  ☆16Updated this week
• InfectionMedicineProteomics / DPKS
  Data Processing Kitchen Sink for proteomics data
  ☆11Updated 3 weeks ago
• jspaezp / elfragmentador
  This repository attempts to implement a neural net that leverages the transformer architecture to predict peptide properties (retention t…
  ☆10Updated 6 months ago
• HUPO-PSI / ProForma
  HUPO-PSI Standardized peptidoform notation
  ☆18Updated 3 weeks ago
• statisticalbiotechnology / triqler
  The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code
  ☆24Updated 2 weeks ago
• statisticalbiotechnology / maracluster
  Matthew The's implementation of MaRaCluster
  ☆11Updated 2 years ago
• Protea-Glycosciences / GlyCombo
  GlyCombo, a combinatorial glycan composition assignment tool
  ☆12Updated 3 months ago
• theGreatHerrLebert / sagepy
  A python interface to the SAGE search engine for mass spectrometry proteomics
  ☆13Updated this week
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated 4 months ago
• CompOmics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆27Updated last month
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆37Updated 2 weeks ago
• EuBIC / EuBIC2023
  EuBIC 2023 developer's meeting
  ☆13Updated 2 years ago
• EuBIC / EuBIC2025
  EuBIC-MS Developers Meeting 2025 on Computational Mass Spectrometry
  ☆11Updated 6 months ago
• computational-metabolomics / dimspy
  Python package for processing direct-infusion mass spectrometry-based metabolomics and lipidomics data
  ☆19Updated last year
• MarcIsak / MSLibrarian
  MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics
  ☆14Updated 2 years ago
• pFindStudio / pGlyco3
  ☆20Updated 3 months ago
• bigbio / pmultiqc
  A library for QC report based on MultiQC framework
  ☆14Updated 2 weeks ago
• snijderlab / align-cli
  A CLI for pairwise alignment of sequences, using both normal and mass based alignment.
  ☆13Updated 2 weeks ago
• CaronLab / MhcVizPipe
  A reporting pipeline for visualization of immunopeptidomics MS data.
  ☆12Updated 2 years ago
• lazear / mz_parquet
  ☆13Updated last week
• kusterlab / universal_spectrum_explorer
  ☆15Updated 3 years ago
• bigbio / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆48Updated this week