Biological prediction models made simple.
☆52Jul 24, 2026Updated this week
Alternatives and similar repositories for biotrainer
Users that are interested in biotrainer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ⚠️ Moved to github.com/tsenoner/protspace — this repo is archived (Python package now lives under apps/protspace/ in the monorepo).☆51Jul 14, 2026Updated last week
- Unleash MMseqs2’s power for your protein and nucleotide sequence analysis. Fast, simple, seamless!☆47Jun 25, 2026Updated last month
- This repository contains the codebase for the paper "Leveraging ancestral sequence reconstruction for protein representation learning".☆13Jun 24, 2026Updated last month
- Pooling by PageRank Token Importance. This is a weighted average pooling method where the weights are derived from the internal attention…☆20Jun 11, 2025Updated last year
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆135Apr 23, 2026Updated 3 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Data repository for "Fine-tuning protein language models boosts predictions across diverse tasks"☆61Nov 5, 2025Updated 8 months ago
- Bilingual Language Model for Protein Sequence and Structure☆318Mar 6, 2026Updated 4 months ago
- A compilation of deep learning methods for protein design☆95Nov 5, 2022Updated 3 years ago
- ☆58May 26, 2026Updated 2 months ago
- Get protein embeddings from protein sequences☆508Apr 28, 2023Updated 3 years ago
- Sapiens is a human antibody language model based on BERT.☆78Jan 22, 2026Updated 6 months ago
- ☆27Apr 22, 2024Updated 2 years ago
- Deep Learning Library and Benchmark for Protein Sequence Learning (Bioinformatics 2025)☆45Mar 30, 2026Updated 3 months ago
- Prediction of protein melting temperatures directly from sequences☆14Apr 16, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Expert-Guided Protein Language Models enable Accurate and Blazingly Fast Fitness Prediction☆17Feb 6, 2026Updated 5 months ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆41Aug 29, 2025Updated 10 months ago
- Transformer for protein function prediction (version 2)☆14Jun 5, 2026Updated last month
- Based off of the official Rostlab & PredictProtein website installation, as of 2020-09-07, the produced Docker image from this repository…☆15Feb 13, 2023Updated 3 years ago
- ☆31Aug 26, 2025Updated 11 months ago
- Transmembrane proteins predicted through Language Model embeddings☆51Feb 24, 2026Updated 5 months ago
- Protein scoring and sampling of 'Combinatorial Variant Effects from Structure' (CoVES)☆11Jan 5, 2024Updated 2 years ago
- DomainMapper is a parser for hmmscan full output files built centrally around ECOD domain definitions. Users can optimize DomainMapper's …☆13Dec 13, 2023Updated 2 years ago
- A fast, alignment-free method for estimating sequence conservation using protein sequence embedding☆21Feb 6, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆12Dec 10, 2024Updated last year
- Code for the paper "OneProt: Towards Multi-Modal Protein Foundation Models"☆24Jun 30, 2026Updated 3 weeks ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆72Apr 13, 2026Updated 3 months ago
- ☆119Dec 7, 2022Updated 3 years ago
- A tool for 2D protein visualization aimed at improving the comparability of protein structures through standardized 2D visualizations.☆22Mar 13, 2026Updated 4 months ago
- Ankh: Optimized Protein Language Model☆249Jun 16, 2025Updated last year
- ☆20Nov 21, 2025Updated 8 months ago
- Cython bindings and Python interface to the MEME suite, a collection of tools for the analysis of sequence motifs.☆17Mar 7, 2026Updated 4 months ago
- The official repository for the ARSENAL model☆16Jul 3, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…☆86Sep 11, 2025Updated 10 months ago
- Evolutionary velocity with protein language models☆98Dec 9, 2025Updated 7 months ago
- The central entry point to the P2Rank project with links to the individual projects, including references to documentation, datasets, etc…☆14Feb 11, 2026Updated 5 months ago
- Protein discovery tool for mining in the Alphafold database based on the position of few amino acids.☆33Jun 25, 2026Updated last month
- Contrasting Sequence with Structure: Pre-training Graph Representations with PLMs☆25Jun 8, 2026Updated last month
- ☆12Sep 17, 2024Updated last year
- Implementation of the Pairformer model used in AlphaFold 3☆14Updated this week