sacdallago / biotrainerLinks
Biological prediction models made simple.
☆43Updated last month
Alternatives and similar repositories for biotrainer
Users that are interested in biotrainer are comparing it to the libraries listed below
Sorting:
- ☆68Updated 8 months ago
- ☆39Updated 8 months ago
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆38Updated 8 months ago
- Protein language model trained on coding DNA☆47Updated 7 months ago
- ☆37Updated 4 months ago
- A domain parser for Alphafold models☆38Updated last year
- Results and data from the pilot round of the Protein Engineering Tournament☆29Updated 2 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆69Updated 4 months ago
- GraphPart, a data partitioning method for ML on biological sequences☆27Updated last year
- ☆30Updated last year
- Learning the language of protein-protein interactions☆73Updated last week
- Fast deep learning methods for large-scale protein-protein interaction screening☆40Updated last month
- ☆49Updated 2 months ago
- Efficient implementatin of ESM family.☆56Updated 4 months ago
- Detection of remote homology by comparison of protein language model representations☆53Updated 5 months ago
- Ultra-fast in-silico structure mutation☆33Updated last month
- Tools for annotation, processing and ML for antibody sequences☆29Updated last week
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆54Updated 2 months ago
- Repository for Protein-Vec, a protein embedding mixture of experts model☆37Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆58Updated 4 years ago
- ☆64Updated 7 months ago
- Fast indexing and search of discontinuous motifs in protein structures☆22Updated 3 weeks ago
- The code used to generate the results from Parkinson / Hard et al. 2022☆17Updated last month
- Evolutionary velocity with protein language models☆90Updated last year
- ☆30Updated last year
- ColabFold protocol☆50Updated 7 months ago
- GTalign, HPC protein structure alignment, superposition and search (alpha release)☆45Updated 4 months ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆35Updated 8 months ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆36Updated 4 months ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆34Updated 3 years ago