Alternatives and similar repositories for biotrainer:

Users that are interested in biotrainer are comparing it to the libraries listed below

• tymor22 / tm-vec
  ☆67Updated 6 months ago
• VarunUllanat / mint
  Learning the language of protein-protein interactions
  ☆62Updated 2 weeks ago
• clairemcwhite / vcmsa
  ☆29Updated last year
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆58Updated 4 years ago
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆70Updated 2 months ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆49Updated 2 weeks ago
• oxpig / CaLM
  Protein language model trained on coding DNA
  ☆46Updated 5 months ago
• tymor22 / protein-vec
  Repository for Protein-Vec, a protein embedding mixture of experts model
  ☆37Updated last year
• TattaBio / gLM2
  ☆61Updated 6 months ago
• JudeWells / chainsaw
  ☆37Updated 6 months ago
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆36Updated 6 months ago
• Doudna-lab / GARNET_DL
  ☆36Updated 2 months ago
• minmarg / gtalign_alpha
  GTalign, HPC protein structure alignment, superposition and search (alpha release)
  ☆42Updated 3 months ago
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆71Updated 11 months ago
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆54Updated 2 months ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆90Updated last year
• kWeissenow / EMBER2
  Alignment-free structure prediction using protein language models
  ☆22Updated 2 years ago
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆49Updated 3 months ago
• lehner-lab / MoCHI
  Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…
  ☆44Updated last month
• enijkamp / progen2
  Official release of the ProGen models
  ☆30Updated 2 months ago
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆26Updated last year
• westlake-repl / Denovo-Pinal
  Text-guided protein design
  ☆42Updated this week
• the-protein-engineering-tournament / pet-pilot-2023
  Results and data from the pilot round of the Protein Engineering Tournament
  ☆28Updated 2 weeks ago
• ievapudz / TemStaPro
  TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.
  ☆54Updated last year
• luo-group / ConFit
  Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape
  ☆28Updated 7 months ago
• SNU-CSSB / RF2-Lite
  ☆25Updated 10 months ago
• HySonLab / Directed_Evolution
  Protein Design by Machine Learning guided Directed Evolution
  ☆37Updated last week
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆33Updated 2 years ago
• MIDIfactory / AlphaFastPPi
  Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
  ☆35Updated 6 months ago
• microsoft / protnote
  ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…
  ☆34Updated last month