tractatus / wholebrainLinks
R package for segmentation, registration and generating web-based brain atlases from microscope images
☆93Updated 4 years ago
Alternatives and similar repositories for wholebrain
Users that are interested in wholebrain are comparing it to the libraries listed below
Sorting:
- COmmon COordinate FRAMEwork in R☆38Updated 5 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆56Updated last month
- QC and cell type assignment for patch-seq transcriptomics data☆24Updated last year
- ☆46Updated 5 years ago
- ABBA, controlled from python☆17Updated last month
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆110Updated 5 months ago
- ☆34Updated 8 months ago
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆17Updated 10 months ago
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆24Updated 3 years ago
- AICS Segmentation (One-Way) Mirror☆45Updated 5 years ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆54Updated last year
- This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".☆16Updated 4 years ago
- The framework for quantification of neuronal anatomy☆55Updated last week
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- Code for the image processing and analysis described our Nature Protocols paper.☆10Updated 10 years ago
- Registration to BrainGlobe atlases in napari using Elastix☆28Updated last week
- Activity Quantification and Analysis for molecular spatiotemporal signals☆33Updated last month
- Automated 3D cell detection in very large images☆223Updated last week
- Tools for distributed alignment of massive images☆92Updated last week
- Automated 3D brain registration with support for multiple species and atlases.☆143Updated last week
- computes intrinsic cell features from intracellular electrophysiology data☆28Updated last month
- Phenotypic variation of transcriptomic cell types in mouse motor cortex☆26Updated 4 years ago
- Multichannel Igor Electrophysiology Suite☆29Updated 3 weeks ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated 2 years ago
- AllenDigger, a tool for spatial expression data visualization, spatial heterogeneity delineation and single cell registration based on Al…☆14Updated 2 years ago
- ☆18Updated 3 years ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Updated 11 months ago
- A Python interface to access neuroanatomical atlases☆170Updated this week
- Example vignette for dotdotdot software☆18Updated 4 years ago