Segmentation of anatomical structures in a common coordinate space
☆37Oct 6, 2026Updated last week
Alternatives and similar repositories for brainglobe-segmentation
Users that are interested in brainglobe-segmentation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Automated 3D brain registration in napari with support for multiple species and atlases.☆16Jan 5, 2024Updated 2 years ago
- Visualise brainreg registration output☆10Nov 20, 2021Updated 4 years ago
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Nov 26, 2020Updated 5 years ago
- Derotate images acquired via multiphoton calcium imaging☆17Oct 5, 2026Updated last week
- Fancier logging with python.☆16Oct 7, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A Python package to download neuronal morphologies☆17Oct 5, 2026Updated last week
- ☆11Oct 21, 2025Updated 11 months ago
- General information, resources and dicussions for the BrainGlobe project.☆11Feb 21, 2025Updated last year
- Pose estimation scripts to be run on the SWC HPC cluster☆12Dec 5, 2023Updated 2 years ago
- NIU website on common software problems and their troubleshooting☆10Jul 14, 2026Updated 3 months ago
- ☆10Mar 15, 2023Updated 3 years ago
- Read and write files from the BrainGlobe neuroanatomy suite☆15Oct 6, 2026Updated last week
- Lightweight data specification for systems neuroscience, inspired by BIDS.☆24Jul 14, 2026Updated 3 months ago
- Anatomical space conventions made easy.☆12Oct 6, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Build unbiased anatomical templates from individual images☆14Oct 5, 2026Updated last week
- Automated and reproducible analysis of multiphoton imaging datasets☆26Oct 5, 2026Updated last week
- brainglobe.info website☆14Oct 2, 2026Updated last week
- Automated 3D brain registration with support for multiple species and atlases.☆150Oct 6, 2026Updated last week
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆24Oct 5, 2026Updated last week
- Re-usable GitHub Action scripts☆14Oct 2, 2026Updated last week
- Efficient cell detection in large images using cellfinder in napari☆22Jan 5, 2024Updated 2 years ago
- Utility to create a basic Python project structure with tests, CI etc.☆39Oct 6, 2026Updated last week
- Loading and saving of image data.☆10Feb 9, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A package to manage electrophysiology analysis.☆22Oct 5, 2026Updated last week
- An R toolbox for analysing movement across space and time☆11Oct 6, 2026Updated last week
- Code for recreating the figures in the brainrender paper (Claudi et al. 2020)☆12Dec 11, 2020Updated 5 years ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆52Oct 6, 2026Updated last week
- Registration to BrainGlobe atlases in napari using Elastix☆33Oct 6, 2026Updated last week
- Standalone cellfinder cell detection algorithm☆19Jan 3, 2024Updated 2 years ago
- Mix-and-match computer vision tools for your animal behaviour analysis☆29Oct 5, 2026Updated last week
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆39Nov 24, 2023Updated 2 years ago
- A Python interface to access neuroanatomical atlases☆187Oct 7, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A repository for our participation in Google Summer of Code☆13Apr 15, 2025Updated last year
- Tool for the creation, validation and transfer of neuroscience project folders.☆36Oct 5, 2026Updated last week
- Automated 3D cell detection in very large images☆231Oct 6, 2026Updated last week
- Python Neural Analysis Visualization☆20Oct 5, 2026Updated last week
- A metadata model capturing Spatial Anchoring of Neuroscience Data Structures, including brain atlas definitions.☆14Jun 3, 2026Updated 4 months ago
- A Python package to visualise neuroanatomical data in atlas space☆678Oct 6, 2026Updated last week
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 4 years ago