brainglobe / brainglobe-segmentationLinks
Segmentation of anatomical structures in a common coordinate space
☆35Updated last week
Alternatives and similar repositories for brainglobe-segmentation
Users that are interested in brainglobe-segmentation are comparing it to the libraries listed below
Sorting:
- Read and write files from the BrainGlobe neuroanatomy suite☆15Updated last week
- Efficient cell detection in large images using cellfinder in napari☆22Updated 2 years ago
- Registration to BrainGlobe atlases in napari using Elastix☆28Updated this week
- Visualise brainreg registration output☆10Updated 4 years ago
- Automated 3D brain registration in napari with support for multiple species and atlases.☆16Updated 2 years ago
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆23Updated last week
- Rendering anatomical heatmaps with brainrender and matplotlib☆46Updated last week
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Updated 5 years ago
- Automated 3D brain registration with support for multiple species and atlases.☆142Updated last week
- Loading and saving of image data.☆10Updated last year
- brainglobe.info website☆13Updated last week
- Brainways☆22Updated 4 months ago
- Anatomical space conventions made easy.☆12Updated last week
- GPU-based 3D non-rigid volumetric registration☆41Updated 4 months ago
- ☆46Updated 5 years ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated 2 years ago
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Updated last year
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- A Python interface to access neuroanatomical atlases☆170Updated this week
- ☆34Updated 8 months ago
- Automated 3D cell detection in very large images☆223Updated last week
- Standalone cellfinder cell detection algorithm☆20Updated 2 years ago
- Build unbiased anatomical templates from individual images☆12Updated last week
- How to use Aligning Big Brains and Atlases with Python☆14Updated 2 years ago
- Utility to create a basic Python project structure with tests, CI etc.☆35Updated 2 weeks ago
- CloudReg☆11Updated last year
- Live Mouse Tracker analysis☆34Updated last month
- ☆10Updated 2 years ago
- Lightweight data specification for systems neuroscience, inspired by BIDS.☆20Updated last month
- Fancier logging with python.☆16Updated this week