brainglobe / brainglobe-segmentation
Segmentation of anatomical structures in a common coordinate space
☆31Updated 2 weeks ago
Alternatives and similar repositories for brainglobe-segmentation:
Users that are interested in brainglobe-segmentation are comparing it to the libraries listed below
- Efficient cell detection in large images using cellfinder in napari☆23Updated last year
- Read and write files from the BrainGlobe neuroanatomy suite☆14Updated 2 weeks ago
- Registration to BrainGlobe atlases in napari using Elastix☆22Updated 2 weeks ago
- Automated 3D brain registration in napari with support for multiple species and atlases.☆16Updated last year
- Visualise brainreg registration output☆10Updated 3 years ago
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆21Updated 2 weeks ago
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Updated 4 years ago
- Loading and saving of image data.☆10Updated last year
- Brainways☆16Updated this week
- Data processing tools for animal behavioural analysis☆17Updated this week
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Updated 6 months ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆40Updated 2 weeks ago
- Lightweight data specification for systems neuroscience, inspired by BIDS.☆18Updated 4 months ago
- ☆34Updated last year
- ☆8Updated 3 years ago
- Build unbiased anatomical templates from individual images☆11Updated 2 weeks ago
- Space for discussion of a standardized structure (directory layout + metadata) for experimental data in systems neuroscience, similar to …☆21Updated 2 years ago
- Live Mouse Tracker analysis☆28Updated 2 weeks ago
- Standalone cellfinder cell detection algorithm☆19Updated last year
- ☆10Updated 2 years ago
- How to use Aligning Big Brains and Atlases with Python☆15Updated last year
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆49Updated last month
- Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by Spi…☆13Updated this week
- Fast, volumetric cell detection. In development.☆16Updated last week
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆16Updated last year
- ☆18Updated 3 years ago
- General information, resources and dicussions for the BrainGlobe project.☆11Updated 2 months ago
- Tools for machine learning of animal behavior☆14Updated last year
- ☆21Updated last month
- ☆45Updated 4 years ago