Segmentation of anatomical structures in a common coordinate space
☆37Apr 8, 2026Updated last week
Alternatives and similar repositories for brainglobe-segmentation
Users that are interested in brainglobe-segmentation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Automated 3D brain registration in napari with support for multiple species and atlases.☆16Jan 5, 2024Updated 2 years ago
- Visualise brainreg registration output☆10Nov 20, 2021Updated 4 years ago
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Nov 26, 2020Updated 5 years ago
- Fancier logging with python.☆16Apr 8, 2026Updated last week
- A Python package to download neuronal morphologies☆18Apr 8, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆11Oct 21, 2025Updated 5 months ago
- General information, resources and dicussions for the BrainGlobe project.☆11Feb 21, 2025Updated last year
- Pose estimation scripts to be run on the SWC HPC cluster☆12Dec 5, 2023Updated 2 years ago
- NIU website on common software problems and their troubleshooting☆10Feb 13, 2026Updated 2 months ago
- Read and write files from the BrainGlobe neuroanatomy suite☆15Apr 9, 2026Updated last week
- Lightweight data specification for systems neuroscience, inspired by BIDS.☆21Dec 16, 2025Updated 3 months ago
- Build unbiased anatomical templates from individual images☆12Apr 8, 2026Updated last week
- Anatomical space conventions made easy.☆12Apr 8, 2026Updated last week
- Automated 3D brain registration with support for multiple species and atlases.☆146Apr 8, 2026Updated last week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- brainglobe.info website☆15Apr 1, 2026Updated 2 weeks ago
- ☆10Mar 15, 2023Updated 3 years ago
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆24Apr 8, 2026Updated last week
- Re-usable GitHub Action scripts☆14Apr 8, 2026Updated last week
- Efficient cell detection in large images using cellfinder in napari☆22Jan 5, 2024Updated 2 years ago
- Loading and saving of image data.☆10Feb 9, 2024Updated 2 years ago
- Utility to create a basic Python project structure with tests, CI etc.☆38Apr 8, 2026Updated last week
- A package to manage electrophysiology analysis.☆23Apr 6, 2026Updated last week
- An R toolbox for analysing movement across space and time☆10Jan 16, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code for recreating the figures in the brainrender paper (Claudi et al. 2020)☆12Dec 11, 2020Updated 5 years ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆51Updated this week
- Standalone cellfinder cell detection algorithm☆20Jan 3, 2024Updated 2 years ago
- Mix-and-match computer vision tools for your animal behaviour analysis☆28Apr 6, 2026Updated last week
- Registration to BrainGlobe atlases in napari using Elastix☆30Apr 8, 2026Updated last week
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆39Nov 24, 2023Updated 2 years ago
- A Python interface to access neuroanatomical atlases☆179Apr 8, 2026Updated last week
- Tool for the creation, validation and transfer of neuroscience project folders.☆35Apr 6, 2026Updated last week
- A repository for our participation in Google Summer of Code☆13Apr 15, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Automated 3D cell detection in very large images☆226Apr 8, 2026Updated last week
- DREEM Relates Every Entities' Motion (DREEM). Global Tracking Transformers for biological multi-object tracking.☆17Mar 23, 2026Updated 3 weeks ago
- A metadata model capturing Spatial Anchoring of Neuroscience Data Structures, including brain atlas definitions.☆14Mar 11, 2026Updated last month
- A Python package to visualise neuroanatomical data in atlas space☆637Apr 8, 2026Updated last week
- GPU-based 3D non-rigid volumetric registration☆47Aug 26, 2025Updated 7 months ago
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 3 years ago
- Prototype implementation of napari-integrated CNN training viewer☆14Dec 27, 2024Updated last year