NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.
☆78Jul 30, 2026Updated last week
Alternatives and similar repositories for nat
Users that are interested in nat are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package implementing the NBLAST neuron search algorithm, as an add-on for the NeuroAnatomy Toolbox (nat) R package.☆17Updated this week
- Documentations of BigNeuron Project progress☆24Feb 3, 2016Updated 10 years ago
- Software package for neuron reconstruction and visualization☆40May 27, 2025Updated last year
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆73Nov 16, 2022Updated 3 years ago
- The framework for quantification of neuronal anatomy☆60Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package to read ImageJ ROI files☆12Aug 17, 2024Updated last year
- Acquiring images from allen brain atlas, mouse ISH experiments in R.☆17Mar 20, 2024Updated 2 years ago
- A Primer on Motion Capture with Deep Learning:Principles, Pitfalls and Perspectives☆22Sep 11, 2021Updated 4 years ago
- Python library for analysis of neuroanatomical data.☆117Updated this week
- ImageJ plugin for neurite tracing and analysis☆14Mar 19, 2020Updated 6 years ago
- A repository of freely available SVG drawings for your publications, presentations etc.☆17Nov 29, 2015Updated 10 years ago
- Tools to work with the FlyWire connectome. Fully interoperable with navis.☆24Jul 9, 2026Updated last month
- Neuronal Morphology Analysis Tool☆109Feb 26, 2025Updated last year
- Umbrella package to help install/load nat packages☆11Mar 9, 2026Updated 5 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆12Mar 25, 2022Updated 4 years ago
- www.vaa3d.org : download the latest Binary version here https://github.com/Vaa3D/release/releases/tag/v3.200☆42Sep 26, 2025Updated 10 months ago
- A unified framework for skeletonization, morphological analysis, and connectivity analysis.☆43Aug 23, 2024Updated last year
- Automated 3D cell detection in very large images☆230Updated this week
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆92Jul 16, 2021Updated 5 years ago
- This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.☆37Updated this week
- Binary releases of Vaa3D and related software components☆45Nov 11, 2023Updated 2 years ago
- Annotation of filaments and other curvilinear structures in 3D.☆12Oct 9, 2023Updated 2 years ago
- R package for extending testthat to more testing helpers☆22Aug 14, 2017Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Software dedicated to automatic generation of 3D models of brain structures.☆17Apr 24, 2017Updated 9 years ago
- ☆16Nov 2, 2016Updated 9 years ago
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆17Jul 15, 2015Updated 11 years ago
- FluoRender is an interactive tool for fluorescence microscopy data visualization and analysis☆48Updated this week
- ☆13May 1, 2025Updated last year
- Registration to BrainGlobe atlases in napari using Elastix☆30Updated this week
- Fiber photometry analysis☆24Apr 20, 2026Updated 3 months ago
- Facemap: Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also incl…☆199Jan 26, 2026Updated 6 months ago
- Brain Analysis using Graph Theory☆12Jul 5, 2019Updated 7 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆68Sep 12, 2019Updated 6 years ago
- Brain flatmaps generation☆12Oct 5, 2022Updated 3 years ago
- ☆32Jun 6, 2019Updated 7 years ago
- Public code for Zheng, Lauritzen et al. (2018)☆15Mar 22, 2019Updated 7 years ago
- GUI to compute and explore receptive fields, primarily from calcium imaging recordings☆13Jun 26, 2021Updated 5 years ago
- A collection of notebooks to provide examples of using Microns-explorer.org datasets☆43May 30, 2024Updated 2 years ago
- Metrics for spike sorting validation/quality control☆15Sep 8, 2021Updated 4 years ago