ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
☆57Apr 29, 2026Updated 2 weeks ago
Alternatives and similar repositories for ijp-imagetoatlas
Users that are interested in ijp-imagetoatlas are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆123May 6, 2026Updated last week
- ☆21Apr 28, 2026Updated 3 weeks ago
- ABBA, controlled from python☆20Nov 24, 2025Updated 5 months ago
- Create 3D/4D animations using a natural language-based syntax☆61Jun 6, 2025Updated 11 months ago
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Registration to BrainGlobe atlases in napari using Elastix☆29May 5, 2026Updated 2 weeks ago
- Commands and Classes for interfacing between Imaris and Fiji☆13Apr 20, 2026Updated 3 weeks ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆31Oct 13, 2023Updated 2 years ago
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆24Jul 4, 2022Updated 3 years ago
- Efficient cell detection in large images using cellfinder in napari☆22Jan 5, 2024Updated 2 years ago
- Automated 3D brain registration with support for multiple species and atlases.☆147May 5, 2026Updated 2 weeks ago
- Read and write files from the BrainGlobe neuroanatomy suite☆15May 5, 2026Updated 2 weeks ago
- ☆38Sep 4, 2025Updated 8 months ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Oct 10, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- MagellanMapper is a graphical interface for 3D bioimage annotation, atlas registration, and regional quantification☆22Mar 30, 2026Updated last month
- General information, resources and dicussions for the BrainGlobe project.☆11Feb 21, 2025Updated last year
- miniscope analysis pipeline with interactive visualizations☆98Jul 19, 2024Updated last year
- Script that registers Histology slices to volumetric image data☆11Oct 4, 2023Updated 2 years ago
- A Python interface to access neuroanatomical atlases☆179May 10, 2026Updated last week
- Get Your Brain Together Neuroimage Registration Workshops and Hackathons☆22Nov 14, 2024Updated last year
- https://nutil.readthedocs.io/en/latest/☆13Apr 8, 2026Updated last month
- GPU-accelerated image processing in QuPath☆16Oct 23, 2021Updated 4 years ago
- Dimensionality reduction (UMAP, t-SNE, PCA) for ImageJ/Fiji☆12May 6, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Build unbiased anatomical templates from individual images☆12May 5, 2026Updated 2 weeks ago
- Brainways☆23Aug 28, 2025Updated 8 months ago
- ☆10Nov 29, 2024Updated last year
- GPU-based 3D non-rigid volumetric registration☆49Aug 26, 2025Updated 8 months ago
- A Python package to visualise neuroanatomical data in atlas space☆652May 12, 2026Updated last week
- ☆18Feb 10, 2022Updated 4 years ago
- Code for the image processing and analysis described our Nature Protocols paper.☆10Jun 26, 2015Updated 10 years ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆39Nov 24, 2023Updated 2 years ago
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆24Updated this week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 3 years ago
- A visualization app for 3D-registered data processed in ABBA and QuPath☆20Oct 21, 2022Updated 3 years ago
- Prototype implementation of napari-integrated CNN training viewer☆14Dec 27, 2024Updated last year
- ☆21Apr 1, 2026Updated last month
- ☆46May 21, 2020Updated 5 years ago
- MultiModal Big Image Data Sharing and Exploration☆20Jan 13, 2023Updated 3 years ago
- The Java library to run Deep Learning models☆34Updated this week