BIOP / ijp-imagetoatlasLinks
ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
☆49Updated 2 weeks ago
Alternatives and similar repositories for ijp-imagetoatlas
Users that are interested in ijp-imagetoatlas are comparing it to the libraries listed below
Sorting:
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- Brainways☆18Updated last month
- The ImageJ framework for quantification of neuronal anatomy☆50Updated last week
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆37Updated last month
- ☆18Updated 3 years ago
- ☆45Updated 5 years ago
- Tools for distributed alignment of massive images☆84Updated 3 weeks ago
- Registration to BrainGlobe atlases in napari using Elastix☆22Updated this week
- Read and write files from the BrainGlobe neuroanatomy suite☆14Updated last week
- ABBA, controlled from python☆13Updated 3 months ago
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆21Updated 3 years ago
- Efficient cell detection in large images using cellfinder in napari☆22Updated last year
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆98Updated 3 weeks ago
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆16Updated 3 months ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated last year
- Segmentation of anatomical structures in a common coordinate space☆33Updated last week
- How to use Aligning Big Brains and Atlases with Python☆15Updated 2 years ago
- Activity Quantification and Analysis for molecular spatiotemporal signals☆27Updated 3 months ago
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆22Updated last week
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆96Updated last week
- ☆18Updated 3 years ago
- ImgLib2/BDV implementation of Stitching for large datasets☆74Updated 2 months ago
- ☆34Updated last month
- Janelia Workstation☆25Updated last month
- Automated 3D brain registration with support for multiple species and atlases.☆134Updated last week
- GPU-based 3D non-rigid volumetric registration☆37Updated last month
- Rendering anatomical heatmaps with brainrender and matplotlib☆43Updated last week
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 3 years ago
- Standalone cellfinder cell detection algorithm☆19Updated last year
- A Python interface to access neuroanatomical atlases☆155Updated this week