ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
☆61Oct 18, 2026Updated last week
Alternatives and similar repositories for ijp-imagetoatlas
Users that are interested in ijp-imagetoatlas are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ABBA, controlled from python☆21Oct 15, 2026Updated 2 weeks ago
- A collection of tools for whole-brain data extraction☆12Jul 31, 2026Updated 2 months ago
- Python library for brain-wide quantification and spatial analysis.☆12Jun 26, 2026Updated 4 months ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆134Sep 8, 2026Updated last month
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Brainways☆25Aug 28, 2025Updated last year
- ☆22Aug 24, 2026Updated 2 months ago
- Conversion between spatial transformations of various formats / parametrizations☆10May 15, 2026Updated 5 months ago
- Commands and Classes for interfacing between Imaris and Fiji☆13Sep 1, 2026Updated last month
- MagellanMapper is a graphical interface for 3D bioimage annotation, atlas registration, and regional quantification☆23Mar 30, 2026Updated 7 months ago
- Script that registers Histology slices to volumetric image data☆11Oct 4, 2023Updated 3 years ago
- Create 3D/4D animations using a natural language-based syntax☆60Jun 6, 2025Updated last year
- Shared general purpose tools for the BrainGlobe project☆13Updated this week
- ☆41Sep 4, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆23Jul 4, 2022Updated 4 years ago
- ilastik plugin for napari☆15Mar 2, 2026Updated 7 months ago
- Automated 3D brain registration with support for multiple species and atlases.☆151Oct 20, 2026Updated last week
- UNRAVEL: UN-biased high-Resolution Analysis and Validation of Ensembles using Light sheet images☆14Oct 22, 2026Updated last week
- https://nutil.readthedocs.io/en/latest/☆13Jun 15, 2026Updated 4 months ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆32Oct 13, 2023Updated 3 years ago
- A Python interface to access neuroanatomical atlases☆190Updated this week
- MultiModal Big Image Data Sharing and Exploration☆20Jan 13, 2023Updated 3 years ago
- miniscope analysis pipeline with interactive visualizations☆101Aug 25, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Build unbiased anatomical templates from individual images☆14Oct 13, 2026Updated 2 weeks ago
- ☆24Aug 26, 2026Updated 2 months ago
- Universal Renderer for Neuroscience☆16Nov 4, 2025Updated 11 months ago
- Registration to BrainGlobe atlases in napari using Elastix☆34Oct 13, 2026Updated 2 weeks ago
- A visualization app for 3D-registered data processed in ABBA and QuPath☆21Oct 21, 2022Updated 4 years ago
- Workflows that utilise BrainGlobe tools to perform data analysis and visualisation.☆13Oct 16, 2026Updated 2 weeks ago
- GPU-based 3D non-rigid volumetric registration☆49Aug 26, 2025Updated last year
- Read and write files from the BrainGlobe neuroanatomy suite☆16Oct 13, 2026Updated 2 weeks ago
- A tool for translating between common coordinate frameworks using deformation matrices.☆17Oct 15, 2026Updated 2 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Efficient cell detection in large images using cellfinder in napari☆23Jan 5, 2024Updated 2 years ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆148Updated this week
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆31Updated this week
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆36Oct 10, 2022Updated 4 years ago
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆24Oct 13, 2026Updated 2 weeks ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆47Dec 4, 2025Updated 10 months ago
- Maven project to easily connect to OMERO.☆11Oct 1, 2026Updated 3 weeks ago