BIOP / ijp-imagetoatlasLinks
ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
☆56Updated 2 weeks ago
Alternatives and similar repositories for ijp-imagetoatlas
Users that are interested in ijp-imagetoatlas are comparing it to the libraries listed below
Sorting:
- Registration to BrainGlobe atlases in napari using Elastix☆26Updated 3 weeks ago
- Brainways☆22Updated 4 months ago
- Efficient cell detection in large images using cellfinder in napari☆22Updated last year
- ABBA, controlled from python☆17Updated last month
- The framework for quantification of neuronal anatomy☆55Updated 3 weeks ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- Read and write files from the BrainGlobe neuroanatomy suite☆15Updated 3 weeks ago
- Tools for distributed alignment of massive images☆90Updated last week
- ☆46Updated 5 years ago
- Segmentation of anatomical structures in a common coordinate space☆34Updated 3 weeks ago
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆23Updated 3 weeks ago
- ☆19Updated 3 years ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated 2 years ago
- How to use Aligning Big Brains and Atlases with Python☆14Updated 2 years ago
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆24Updated 3 years ago
- A visualization app for 3D-registered data processed in ABBA and QuPath☆20Updated 3 years ago
- Running compute-intense parts of BigStitcher distributed☆28Updated 2 weeks ago
- ☆18Updated 3 years ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆109Updated 4 months ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆40Updated last week
- Rendering anatomical heatmaps with brainrender and matplotlib☆46Updated 3 weeks ago
- ☆34Updated 7 months ago
- Activity Quantification and Analysis for molecular spatiotemporal signals☆32Updated last week
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆17Updated 9 months ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆30Updated 2 years ago
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆111Updated 2 months ago
- Automated 3D brain registration with support for multiple species and atlases.☆141Updated this week
- Anatomical space conventions made easy.☆12Updated 3 weeks ago
- brainglobe.info website☆12Updated last week
- GPU-based 3D non-rigid volumetric registration☆41Updated 4 months ago