SainsburyWellcomeCentre / lasagnaLinks
3-D imaging visualisation through slicing
☆31Updated 9 months ago
Alternatives and similar repositories for lasagna
Users that are interested in lasagna are comparing it to the libraries listed below
Sorting:
- Segmentation of anatomical structures in a common coordinate space☆33Updated 2 weeks ago
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Updated 4 years ago
- CloudReg☆11Updated last year
- Live Mouse Tracker analysis☆33Updated 3 weeks ago
- Loading and saving of image data.☆10Updated last year
- A Python toolbox for Fast Image Signal Separation Analysis, designed for Calcium Imaging data.☆33Updated 2 weeks ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆44Updated 3 weeks ago
- Read and write files from the BrainGlobe neuroanatomy suite☆14Updated 3 weeks ago
- Automated 3D brain registration with support for multiple species and atlases.☆138Updated 3 weeks ago
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Updated last year
- Visualise brainreg registration output☆10Updated 3 years ago
- Brainways☆21Updated 2 months ago
- ☆34Updated 5 months ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated last year
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Multichannel time series lossless compression in pure Python based on NumPy and zlib☆41Updated 7 months ago
- Automated 3D brain registration in napari with support for multiple species and atlases.☆16Updated last year
- Registration to BrainGlobe atlases in napari using Elastix☆23Updated 3 weeks ago
- Z-Brain Viewer and Analysis Scripts for MAP-Mapping☆22Updated 6 months ago
- Serial-section automated anatomy extension for ScanImage☆17Updated 2 months ago
- Analyze neuroscience data in the cloud☆18Updated last year
- motion correction☆17Updated 2 years ago
- A modular package to control stimulation and track behaviour☆47Updated 11 months ago
- SamuROI - Structured analysis of multiple user-defined ROIs, an open source Python-based analysis environment for imaging data.☆17Updated 6 years ago
- This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular …☆26Updated 7 years ago
- Napari plugin for working with video files.☆13Updated 2 months ago
- Python package for analysis of dynamic fluorescence microscopy data☆102Updated 6 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated last year
- ☆23Updated last month