3-D imaging visualisation through slicing
☆31Jan 14, 2025Updated last year
Alternatives and similar repositories for lasagna
Users that are interested in lasagna are comparing it to the libraries listed below
Sorting:
- pyqt5 dependent applications for IBL sessions☆33Jan 27, 2026Updated last month
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Aug 13, 2021Updated 4 years ago
- SpikeGLX postprocessing [tshift filter CAR fix join extract]☆15Jan 12, 2026Updated last month
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Nov 26, 2020Updated 5 years ago
- Histology processing☆74Updated this week
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 4 years ago
- Serial-section automated anatomy extension for ScanImage☆17Feb 17, 2026Updated 3 weeks ago
- Visualise brainreg registration output☆10Nov 20, 2021Updated 4 years ago
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 3 years ago
- Prototype implementation of napari-integrated CNN training viewer☆14Dec 27, 2024Updated last year
- Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…☆16Oct 26, 2022Updated 3 years ago
- Collection of tools to handle Neuropixel 1.0 and 2.0 data☆19Feb 5, 2026Updated last month
- ImageJ convenience layer for N5☆19Feb 27, 2026Updated last week
- Online documentation and reference for CLIJ☆28May 21, 2021Updated 4 years ago
- Lattice light-sheet post-processing utility.☆30Mar 2, 2026Updated last week
- MultiModal Big Image Data Sharing and Exploration☆18Jan 13, 2023Updated 3 years ago
- For laying organizational groundwork☆18Jul 12, 2020Updated 5 years ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆80Apr 16, 2025Updated 10 months ago
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆14Updated this week
- Tools to work with Allen Inst CCF data in matlab☆145Jul 15, 2025Updated 7 months ago
- Stitching of large tiled datasets☆21Feb 13, 2026Updated 3 weeks ago
- ☆18Nov 25, 2025Updated 3 months ago
- Python module for registering and fusing multi-view microscopy data☆24Mar 8, 2025Updated last year
- An open list of tools & resources for 'spikes': recordings of single-unit neural activity (action potentials).☆32Aug 19, 2022Updated 3 years ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆185Jan 26, 2026Updated last month
- ImageJ plugin suite for image feature extraction☆10Dec 17, 2015Updated 10 years ago
- analysis tools for large-scale neural recordings☆17Apr 4, 2025Updated 11 months ago
- Brain flatmaps generation☆11Oct 5, 2022Updated 3 years ago
- Basic start of TensorFlow with TensorBoard☆11Apr 9, 2016Updated 9 years ago
- Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ☆26Jun 3, 2022Updated 3 years ago
- sciview is a tool for visualization and interaction with ND image and mesh data☆73Feb 26, 2026Updated last week
- ☆50Dec 9, 2025Updated 3 months ago
- Automated 3D brain registration with support for multiple species and atlases.☆145Mar 3, 2026Updated last week
- AutoTx - an intelligent background file transfer service for Windows.☆28Feb 13, 2026Updated 3 weeks ago
- Mesoscale activity ephys ingest schema☆11Jul 18, 2023Updated 2 years ago
- A Python interface to access neuroanatomical atlases☆175Mar 3, 2026Updated last week
- SLM binary mask generator for Lattice Light Sheet microscopy☆12Dec 2, 2021Updated 4 years ago
- Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery☆14Apr 10, 2025Updated 11 months ago
- Visualizing feature measurements on label images in napari☆10Jul 24, 2024Updated last year