SainsburyWellcomeCentre / lasagnaLinks
3-D imaging visualisation through slicing
☆30Updated 8 months ago
Alternatives and similar repositories for lasagna
Users that are interested in lasagna are comparing it to the libraries listed below
Sorting:
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Updated 4 years ago
- Segmentation of anatomical structures in a common coordinate space☆33Updated 2 weeks ago
- Visualise brainreg registration output☆10Updated 3 years ago
- Read and write files from the BrainGlobe neuroanatomy suite☆14Updated 2 weeks ago
- Loading and saving of image data.☆10Updated last year
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- Live Mouse Tracker analysis☆32Updated 3 weeks ago
- CloudReg☆11Updated last year
- Brainways☆21Updated 3 weeks ago
- A modular package to control stimulation and track behaviour☆46Updated 10 months ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆44Updated 2 weeks ago
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Updated 10 months ago
- Automated 3D brain registration in napari with support for multiple species and atlases.☆16Updated last year
- Serial-section automated anatomy extension for ScanImage☆15Updated last month
- Registration to BrainGlobe atlases in napari using Elastix☆22Updated last week
- Interactive Python course for using the Neurodata Without Borders format☆15Updated 6 years ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated last year
- motion correction☆17Updated 2 years ago
- Napari plugin for working with video files.☆13Updated last month
- Standalone cellfinder cell detection algorithm☆19Updated last year
- A curated list of awesome Janelia software☆17Updated 6 months ago
- ☆34Updated 4 months ago
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- A Python toolbox for Fast Image Signal Separation Analysis, designed for Calcium Imaging data.☆33Updated last week
- Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by Spi…☆14Updated this week
- Automated 3D brain registration with support for multiple species and atlases.☆136Updated 2 weeks ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated last year
- Python package for analysis of dynamic fluorescence microscopy data☆101Updated 6 years ago
- Z-Brain Viewer and Analysis Scripts for MAP-Mapping☆22Updated 5 months ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated this week