3-D imaging visualisation through slicing
☆31Jan 14, 2025Updated last year
Alternatives and similar repositories for lasagna
Users that are interested in lasagna are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- pyqt5 dependent applications for IBL sessions☆35Jul 2, 2026Updated last week
- SpikeGLX postprocessing [tshift filter CAR fix join extract]☆16May 5, 2026Updated 2 months ago
- Histology processing☆77Jul 2, 2026Updated last week
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Nov 26, 2020Updated 5 years ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Aug 13, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…☆16Oct 26, 2022Updated 3 years ago
- Serial-section automated anatomy extension for ScanImage☆18Updated this week
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 3 years ago
- Prototype implementation of napari-integrated CNN training viewer☆14Dec 27, 2024Updated last year
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 5 years ago
- Collection of tools to handle Neuropixel 1.0 and 2.0 data☆19Updated this week
- MATLAB Streaming Image Viewer - a viewing and analysis platform for ultra-large 3D imaging data☆14Jul 15, 2020Updated 5 years ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆82Jun 3, 2026Updated last month
- For laying organizational groundwork☆18Jul 12, 2020Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Visualise brainreg registration output☆10Nov 20, 2021Updated 4 years ago
- MultiModal Big Image Data Sharing and Exploration☆20Jan 13, 2023Updated 3 years ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆196Jan 26, 2026Updated 5 months ago
- Stitching of large tiled datasets☆23Apr 21, 2026Updated 2 months ago
- IBL core shared libraries☆68Updated this week
- Tools to work with Allen Inst CCF data in matlab☆152Jul 15, 2025Updated 11 months ago
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆70Apr 22, 2026Updated 2 months ago
- Utility to create a basic Python project structure with tests, CI etc.☆39Updated this week
- ☆18Nov 25, 2025Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python module for registering and fusing multi-view microscopy data☆24Mar 8, 2025Updated last year
- Online documentation and reference for CLIJ☆28May 21, 2021Updated 5 years ago
- Distributed Gradient-Domain Processing of Planar and Spherical Images☆26Dec 30, 2020Updated 5 years ago
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆15Updated this week
- DataJoint pipeline for IBL project☆20Dec 15, 2022Updated 3 years ago
- Lightweight electrophysiological data analysis library☆16Apr 29, 2026Updated 2 months ago
- A MATLAB toolbox for running behavioral neuroscience experiments and managing data☆33May 28, 2024Updated 2 years ago
- Lattice light-sheet post-processing utility.☆30Updated this week
- Repository of code, data and CAD files associated with Luo*, Bondy* et al (2020). "An approach for long-term, multi-probe Neuropixels rec…☆11Jul 1, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Motion Tracking☆14Jan 12, 2023Updated 3 years ago
- NWB extension to store pose estimation data☆17Jun 2, 2026Updated last month
- ☆15Feb 5, 2025Updated last year
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆93Jul 16, 2021Updated 4 years ago
- ImageJ convenience layer for N5☆21Jun 29, 2026Updated last week
- Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ☆26Jun 3, 2022Updated 4 years ago
- sciview is a tool for visualization and interaction with ND image and mesh data☆75Jun 22, 2026Updated 2 weeks ago