SainsburyWellcomeCentre / lasagnaLinks
3-D imaging visualisation through slicing
☆30Updated 6 months ago
Alternatives and similar repositories for lasagna
Users that are interested in lasagna are comparing it to the libraries listed below
Sorting:
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Updated 4 years ago
- Segmentation of anatomical structures in a common coordinate space☆33Updated last week
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- Brainways☆18Updated last month
- Live Mouse Tracker analysis☆31Updated last month
- Visualise brainreg registration output☆10Updated 3 years ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆43Updated last week
- Geometry Processing of Conventionally Produced Mouse Brain Slice Images☆7Updated 5 years ago
- Read and write files from the BrainGlobe neuroanatomy suite☆14Updated last week
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆49Updated 2 weeks ago
- Automated 3D brain registration with support for multiple species and atlases.☆134Updated last week
- Loading and saving of image data.☆10Updated last year
- A modular package to control stimulation and track behaviour☆46Updated 8 months ago
- A Python toolbox for Fast Image Signal Separation Analysis, designed for Calcium Imaging data.☆32Updated 3 weeks ago
- CloudReg☆11Updated last year
- ☆8Updated 3 years ago
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Updated 8 months ago
- Serial-section automated anatomy extension for ScanImage☆15Updated last week
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated last year
- SamuROI - Structured analysis of multiple user-defined ROIs, an open source Python-based analysis environment for imaging data.☆17Updated 6 years ago
- Efficient cell detection in large images using cellfinder in napari☆22Updated last year
- ☆34Updated last month
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- ☆52Updated 10 months ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆61Updated last year
- Registration to BrainGlobe atlases in napari using Elastix☆22Updated this week
- Analyze neuroscience data in the cloud☆18Updated 10 months ago
- ☆39Updated 3 years ago
- Automated 3D brain registration in napari with support for multiple species and atlases.☆16Updated last year
- ☆28Updated last year