AllenInstitute / cocoframerLinks
COmmon COordinate FRAMEwork in R
☆37Updated 5 years ago
Alternatives and similar repositories for cocoframer
Users that are interested in cocoframer are comparing it to the libraries listed below
Sorting:
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆91Updated 4 years ago
- Semi-manual alignment to reference templates (SMART): An open source pipeline in R for whole brain mapping☆14Updated 4 years ago
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆24Updated 3 years ago
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆17Updated 8 months ago
- QC and cell type assignment for patch-seq transcriptomics data☆23Updated last year
- Code for the image processing and analysis described our Nature Protocols paper.☆10Updated 10 years ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆106Updated 3 months ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- Phenotypic variation of transcriptomic cell types in mouse motor cortex☆26Updated 4 years ago
- Multichannel Igor Electrophysiology Suite☆30Updated last week
- Tools to register histological section images and cell count locations to mouse brain atlas☆28Updated 3 years ago
- ABBA, controlled from python☆15Updated 2 weeks ago
- This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".☆16Updated 4 years ago
- A Python interface to access neuroanatomical atlases☆165Updated last week
- UCLA Multiphoton Miniature Microscope☆15Updated 6 months ago
- R Scripts to analyze deep lab cut point data and related data☆68Updated 2 years ago
- AllenDigger, a tool for spatial expression data visualization, spatial heterogeneity delineation and single cell registration based on Al…☆14Updated 2 years ago
- ☆52Updated last year
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated last year
- ☆18Updated 3 years ago
- A GUI and library for doing multi-fiber photometry☆18Updated 8 years ago
- computes intrinsic cell features from intracellular electrophysiology data☆27Updated last month
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆54Updated last week
- Neuroscience/electrophsyiology data analysis tools (mostly Matlab)☆14Updated 6 years ago
- ☆12Updated 9 years ago
- ☆45Updated 5 years ago
- The ImageJ framework for quantification of neuronal anatomy☆52Updated last week
- Guided Photometry Analysis in Python, a free and open-source FP analysis tool.☆78Updated 2 weeks ago
- Analysis of TrackMate XML outputs in R☆16Updated 2 months ago
- ☆34Updated 6 months ago