brainglobe / sliceregLinks
A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
☆37Updated 2 years ago
Alternatives and similar repositories for slicereg
Users that are interested in slicereg are comparing it to the libraries listed below
Sorting:
- Registration to BrainGlobe atlases in napari using Elastix☆29Updated this week
- Automated 3D brain registration with support for multiple species and atlases.☆143Updated this week
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- Segmentation of anatomical structures in a common coordinate space☆35Updated this week
- Rendering anatomical heatmaps with brainrender and matplotlib☆47Updated this week
- Read and write files from the BrainGlobe neuroanatomy suite☆15Updated this week
- Efficient cell detection in large images using cellfinder in napari☆22Updated 2 years ago
- ☆19Updated 3 years ago
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆23Updated this week
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆113Updated 5 months ago
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆24Updated 3 years ago
- Brainways☆22Updated 5 months ago
- GPU-based 3D non-rigid volumetric registration☆43Updated 5 months ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆138Updated 3 weeks ago
- Anatomical space conventions made easy.☆12Updated this week
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Updated last year
- brainglobe.info website☆13Updated this week
- Tools for distributed alignment of massive images☆92Updated this week
- ☆18Updated 3 years ago
- ☆46Updated 5 years ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆31Updated 2 years ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆56Updated this week
- Loading and saving of image data.☆10Updated last year
- Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…☆16Updated 3 years ago
- Automated 3D brain registration in napari with support for multiple species and atlases.☆16Updated 2 years ago
- CloudReg☆11Updated last year
- A visualization app for 3D-registered data processed in ABBA and QuPath☆20Updated 3 years ago
- ☆10Updated 2 years ago
- A Python interface to access neuroanatomical atlases☆170Updated last week
- How to use Aligning Big Brains and Atlases with Python☆14Updated 2 years ago