brainglobe / sliceregLinks
A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
☆36Updated last year
Alternatives and similar repositories for slicereg
Users that are interested in slicereg are comparing it to the libraries listed below
Sorting:
- Automated 3D brain registration with support for multiple species and atlases.☆137Updated this week
- Segmentation of anatomical structures in a common coordinate space☆33Updated this week
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- Efficient cell detection in large images using cellfinder in napari☆22Updated last year
- Tools for distributed alignment of massive images☆86Updated 3 weeks ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆128Updated last week
- A visualization app for 3D-registered data processed in ABBA and QuPath☆19Updated 2 years ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆105Updated last month
- Rendering anatomical heatmaps with brainrender and matplotlib☆44Updated 2 weeks ago
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆23Updated 3 years ago
- Brainways☆21Updated last month
- ☆18Updated 3 years ago
- Registration to BrainGlobe atlases in napari using Elastix☆22Updated last month
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆22Updated last month
- Read and write files from the BrainGlobe neuroanatomy suite☆14Updated last month
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆53Updated last week
- ☆45Updated 5 years ago
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆103Updated this week
- GPU-based 3D non-rigid volumetric registration☆41Updated last month
- Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…☆16Updated 2 years ago
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆19Updated 4 years ago
- The ImageJ framework for quantification of neuronal anatomy☆52Updated last week
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Updated 11 months ago
- Standalone cellfinder cell detection algorithm☆19Updated last year
- Serial-section automated anatomy extension for ScanImage☆16Updated last month
- Anatomical space conventions made easy.☆10Updated this week
- CloudReg☆11Updated last year
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated last year
- ☆34Updated 4 months ago
- A Python interface to access neuroanatomical atlases☆164Updated 3 weeks ago