ClearMap 2 with WobblyStitcher, TubeMap and CellMap
☆140Apr 3, 2026Updated last week
Alternatives and similar repositories for ClearMap
Users that are interested in ClearMap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Jun 18, 2020Updated 5 years ago
- ☆19Apr 6, 2022Updated 4 years ago
- Automated 3D brain registration with support for multiple species and atlases.☆146Updated this week
- ☆46May 21, 2020Updated 5 years ago
- BIRDS plug-in on Fiji and attached jar package☆21Oct 7, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Python code for stitching and image enhancement☆11Updated this week
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆93Jul 16, 2021Updated 4 years ago
- ☆24Sep 13, 2025Updated 7 months ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Aug 13, 2021Updated 4 years ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆56Mar 29, 2026Updated 2 weeks ago
- Multi-modal Image Registration And Connectivity anaLysis☆48Mar 9, 2026Updated last month
- A high-performance deep-learning-based pipeline for whole-brain vasculature segmentation at the capillary resolution☆15Apr 29, 2024Updated last year
- Code for simulating a multi-view acquisition including attenuation, convolution, reduced sampling and poission noise☆13Jun 14, 2022Updated 3 years ago
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆53Jun 6, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆76Aug 23, 2021Updated 4 years ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆31Oct 13, 2023Updated 2 years ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Apr 1, 2025Updated last year
- An image processing package for removing streaks from SPIM images