ClearAnatomics / ClearMapLinks
ClearMap 2 with WobblyStitcher, TubeMap and CellMap
☆128Updated last week
Alternatives and similar repositories for ClearMap
Users that are interested in ClearMap are comparing it to the libraries listed below
Sorting:
- Tools for distributed alignment of massive images☆87Updated last month
- Automated 3D brain registration with support for multiple species and atlases.☆138Updated 3 weeks ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated last year
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆106Updated 2 months ago
- The ImageJ framework for quantification of neuronal anatomy☆52Updated last week
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 3 years ago
- ☆45Updated 5 years ago
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆67Updated 6 years ago
- ☆18Updated 3 years ago
- A visualization app for 3D-registered data processed in ABBA and QuPath☆20Updated 3 years ago
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆19Updated 4 years ago
- ☆38Updated last year
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆104Updated 3 weeks ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆53Updated this week
- Read and write ImageJ ROI format.☆75Updated 5 months ago
- A tool for manual pointwise deformable registration using bigdataviewer.☆33Updated 3 weeks ago
- Automated 3D cell detection in very large images☆219Updated 3 weeks ago
- ☆18Updated 3 years ago
- Utils and convenience functions for large-scale bio-image analysis.☆58Updated 2 months ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆42Updated 3 months ago
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆23Updated 3 years ago
- Brainways☆21Updated 2 months ago
- Z-stack Depth Colorcode ImageJ FIJI plugin☆25Updated last month
- A Python module for accessing Hamamatsu DCIMG files☆14Updated 2 years ago
- Read ROI files .zip or .roi generated with ImageJ.☆53Updated 3 years ago
- How to use Aligning Big Brains and Atlases with Python☆14Updated 2 years ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆55Updated last week
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Updated last year
- Developing a Brain Atlas through Deep Learning☆53Updated 2 months ago