ClearAnatomics / ClearMapLinks
ClearMap 2 with WobblyStitcher, TubeMap and CellMap
☆120Updated last month
Alternatives and similar repositories for ClearMap
Users that are interested in ClearMap are comparing it to the libraries listed below
Sorting:
- The ImageJ framework for quantification of neuronal anatomy☆50Updated last week
- Tools for distributed alignment of massive images☆84Updated 3 weeks ago
- Automated 3D brain registration with support for multiple species and atlases.☆134Updated last week
- ☆37Updated last year
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated last year
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆98Updated 3 weeks ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 2 years ago
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆67Updated 5 years ago
- ☆18Updated 3 years ago
- ☆45Updated 5 years ago
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆21Updated 3 years ago
- Developing a Brain Atlas through Deep Learning☆53Updated last year
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆19Updated 4 years ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆49Updated last week
- Utils and convenience functions for large-scale bio-image analysis.☆57Updated 3 weeks ago
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆96Updated last week
- The ANTsX Ecosystem for Mapping the Mouse Brain☆13Updated 3 weeks ago
- Brainways☆18Updated last month
- Read and write ImageJ ROI format.☆73Updated 2 months ago
- Deep Learning for EM Connectomics☆15Updated 2 years ago
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆73Updated 3 years ago
- Read ROI files .zip or .roi generated with ImageJ.☆53Updated 3 years ago
- ☆22Updated 4 months ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆19Updated last year
- www.vaa3d.org☆79Updated 7 years ago
- A tool for manual pointwise deformable registration using bigdataviewer.☆33Updated last week
- BIRDS plug-in on Fiji and attached jar package☆20Updated 3 years ago
- Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…☆15Updated 2 years ago
- GPU-based 3D non-rigid volumetric registration☆37Updated last month