ClearAnatomics / ClearMap

Related projects: ⓘ

• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆49Updated 4 years ago
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆74Updated last month
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆119Updated 2 weeks ago
• PolarBean / DeepSlice
  A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.
  ☆76Updated 2 weeks ago
• brainglobe / slicereg
  A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
  ☆37Updated 9 months ago
• nadavyayon / Intensify3D
  Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…
  ☆18Updated 3 years ago
• soltanianzadeh / STNeuroNet
  Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…
  ☆60Updated 5 years ago
• cgohlke / roifile
  Read and write ImageJ ROI format
  ☆63Updated this week
• morphonets / SNT
  The ImageJ framework for quantification of neuronal anatomy
  ☆41Updated this week
• albert597 / TRAILMAP
  ☆45Updated 4 years ago
• stegmaierj / Cellpose3D
  3D Extension of the Cellpose Algorithm by Stringer et al., 2021.
  ☆29Updated last year
• lmbneuron / D-LMBmap
  ☆35Updated 6 months ago
• itsasimiqbal / SeBRe
  Developing a Brain Atlas through Deep Learning
  ☆50Updated last year
• seung-lab / DeepEM
  Deep Learning for EM Connectomics
  ☆14Updated 2 years ago
• Gubra-ApS / LSFM-mouse-brain-atlas
  ☆16Updated 2 years ago
• BIOP / ijp-imagetoatlas
  ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
  ☆45Updated last week
• vsnnlab / AMaSiNe
  ☆14Updated last year
• vessap / vessap
  Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning
  ☆62Updated 3 years ago
• PrincetonUniversity / BrainPipe
  ☆18Updated 2 years ago
• dterstege / FASTMAP
  ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing
  ☆18Updated 2 years ago
• saalfeldlab / bigwarp
  A tool for manual pointwise deformable registration using bigdataviewer.
  ☆25Updated last week
• Vaa3D / release
  Binary releases of Vaa3D and related software components
  ☆42Updated 10 months ago
• cuntzlab / treestoolbox
  TREES toolbox
  ☆26Updated this week
• maweigert / neubias_academy_stardist
  ☆28Updated 3 years ago
• phflot / flow_registration
  Flow-Registration toolbox for 2P motion compensation
  ☆21Updated last month
• NICALab / SUPPORT
  Accurate denoising of voltage imaging data through statistically unbiased prediction, Nature Methods.
  ☆68Updated 3 months ago
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆41Updated last year
• lahammond / BrainJ
  Fiji pipeline for automated serial section reconstruction and mouse brain analysis.
  ☆27Updated 11 months ago
• hadim / read-roi
  Read ROI files .zip or .roi generated with ImageJ.
  ☆51Updated 2 years ago
• peterhpark / neuroclear
  Neuroclear is a deep-learning-based Python module to train a deep neural network for the task of applying super-resolution to degraded ax…
  ☆24Updated this week