ClearAnatomics / ClearMapLinks
ClearMap 2 with WobblyStitcher, TubeMap and CellMap
☆120Updated 2 weeks ago
Alternatives and similar repositories for ClearMap
Users that are interested in ClearMap are comparing it to the libraries listed below
Sorting:
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- Tools for distributed alignment of massive images☆82Updated this week
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆97Updated last week
- Automated 3D brain registration with support for multiple species and atlases.☆135Updated 3 weeks ago
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆19Updated 4 years ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 2 years ago
- The ImageJ framework for quantification of neuronal anatomy☆50Updated last week
- ☆37Updated last year
- ☆18Updated 3 years ago
- ☆45Updated 5 years ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆37Updated last year
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆67Updated 5 years ago
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆72Updated 3 years ago
- Deep Learning for EM Connectomics☆15Updated 2 years ago
- ☆18Updated 3 years ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated last year
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆49Updated 3 months ago
- BIRDS plug-in on Fiji and attached jar package☆19Updated 3 years ago
- Utils and convenience functions for large-scale bio-image analysis.☆56Updated last week
- Read and write ImageJ ROI format.☆73Updated last month
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated last year
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆49Updated last year
- Read ROI files .zip or .roi generated with ImageJ.☆53Updated 3 years ago
- Flow-Registration toolbox for 2P motion compensation☆24Updated 11 months ago
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆21Updated 2 years ago
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆47Updated last year
- A tool for manual pointwise deformable registration using bigdataviewer.☆31Updated 2 months ago
- Automated 3D cell detection in very large images☆215Updated this week
- The ANTsX Ecosystem for Mapping the Mouse Brain☆13Updated this week
- Developing a Brain Atlas through Deep Learning☆53Updated last year