cogilab / AMaSiNeLinks
Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mouse Visual Cortex" (Song et al., Cell Reports, 2020)
☆16Updated 2 years ago
Alternatives and similar repositories for AMaSiNe
Users that are interested in AMaSiNe are comparing it to the libraries listed below
Sorting:
- Rendering anatomical heatmaps with brainrender and matplotlib☆44Updated 2 weeks ago
- Brainways☆21Updated last month
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆105Updated last month
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated last year
- Histology processing☆70Updated 3 weeks ago
- ☆18Updated 3 years ago
- ☆52Updated last year
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆23Updated 3 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated last year
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆52Updated 2 years ago
- Automated 3D brain registration with support for multiple species and atlases.☆137Updated this week
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated last year
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆69Updated last month
- Serial-section automated anatomy extension for ScanImage☆16Updated last month
- ☆10Updated 2 years ago
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated last year
- Tools to register histological section images and cell count locations to mouse brain atlas☆28Updated 3 years ago
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆22Updated last month
- ☆34Updated 4 months ago
- Fast, volumetric cell detection. In development.☆19Updated 4 months ago
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Read and write files from the BrainGlobe neuroanatomy suite☆14Updated last month
- ☆19Updated last year
- Collection of probe description for probeinterface☆16Updated last week
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆97Updated 10 months ago
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆17Updated 6 months ago
- ☆18Updated 3 years ago
- ☆45Updated 5 years ago
- A package to manage electrophysiology analysis.☆23Updated last week
- Automated 3D cell detection in very large images☆218Updated this week