Alternatives and similar repositories for AMaSiNe

Users that are interested in AMaSiNe are comparing it to the libraries listed below

• PrincetonUniversity / BrainPipe
  ☆18Updated 3 years ago
• bkntr / brainways
  Brainways
  ☆17Updated 2 weeks ago
• wildrootlab / SHARCQ
  Tools to register histological section images and cell count locations to mouse brain atlas
  ☆25Updated 2 years ago
• petersaj / AP_histology
  Histology processing
  ☆64Updated 3 weeks ago
• lahammond / BrainJ
  Fiji pipeline for automated serial section reconstruction and mouse brain analysis.
  ☆29Updated last year
• DeNardoLab / BehaviorDEPOT
  Repository for BehaviorDEPOT pipeline app files and source code
  ☆38Updated 7 months ago
• brainglobe / brainglobe-heatmap
  Rendering anatomical heatmaps with brainrender and matplotlib
  ☆40Updated last week
• SpikeInterface / probeinterface_library
  Collection of probe description for probeinterface
  ☆12Updated 2 months ago
• ryhattori / PatchWarp
  Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.
  ☆25Updated last year
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆25Updated 6 years ago
• JingyiGF / HERBS
  ☆19Updated last year
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆49Updated last year
• BIOP / ijp-imagetoatlas
  ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
  ☆49Updated 2 months ago
• Whitlock-Group / HERBS
  ☆51Updated 8 months ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆60Updated last year
• Gubra-ApS / LSFM-mouse-brain-atlas
  ☆18Updated 3 years ago
• alihaydaroglu / suite3d
  Fast, volumetric cell detection. In development.
  ☆17Updated this week
• PolarBean / DeepSlice
  A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.
  ☆94Updated last month
• dterstege / FASTMAP
  ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing
  ☆21Updated 2 years ago
• easy-electrophysiology / easy-electrophysiology-analysis
  Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)
  ☆16Updated last month
• yu-lab-vt / AQuA
  An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data
  ☆53Updated last year
• DeepLabCut / napari-deeplabcut
  a napari plugin for labeling and refining keypoint data within DeepLabCut projects
  ☆54Updated 4 months ago
• simonarvin / braincoordinator
  Open-source stereotaxic coordinator
  ☆15Updated 2 years ago
• flatironinstitute / neurosift
  Browser-based NWB visualization and DANDI exploration
  ☆57Updated 2 weeks ago
• brainglobe / brainrender-napari
  A napari plugin to render BrainGlobe atlases and associated data as layers.
  ☆22Updated last week
• int-brain-lab / iblapps
  pyqt5 dependent applications for IBL sessions
  ☆26Updated last month
• brainglobe / brainglobe-template-builder
  Build unbiased anatomical templates from individual images
  ☆11Updated last week
• brainglobe / brainglobe-napari-io
  Read and write files from the BrainGlobe neuroanatomy suite
  ☆14Updated last week
• VirtualBrainLab / Pinpoint
  Multi-probe trajectory planning in an intuitive 3D environment
  ☆53Updated last month
• nel-lab / FIOLA
  ☆34Updated last year