cogilab / AMaSiNeLinks
Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mouse Visual Cortex" (Song et al., Cell Reports, 2020)
☆16Updated 3 years ago
Alternatives and similar repositories for AMaSiNe
Users that are interested in AMaSiNe are comparing it to the libraries listed below
Sorting:
- Brainways☆22Updated 4 months ago
- ☆18Updated 3 years ago
- ☆52Updated last year
- Rendering anatomical heatmaps with brainrender and matplotlib☆46Updated 2 weeks ago
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆24Updated 3 years ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆30Updated 2 years ago
- Histology processing☆72Updated last month
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆23Updated 2 weeks ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆110Updated 5 months ago
- Serial-section automated anatomy extension for ScanImage☆17Updated this week
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆56Updated 2 years ago
- ☆10Updated 2 years ago
- Calcium Data Extraction and Analysis☆49Updated 3 years ago
- Collection of probe description for probeinterface☆17Updated this week
- brainglobe.info website☆13Updated last week
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- miniscope analysis pipeline with interactive visualizations☆98Updated last year
- Anatomical space conventions made easy.☆12Updated 2 weeks ago
- a napari plugin for labeling and refining keypoint data within DeepLabCut projects☆60Updated 3 months ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Updated 4 months ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated 2 years ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆28Updated 3 years ago
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated 2 weeks ago
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆17Updated 10 months ago
- Re-usable GitHub Action scripts☆14Updated last week
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆56Updated last month
- Read and write files from the BrainGlobe neuroanatomy suite☆15Updated 2 weeks ago
- Automated 3D brain registration with support for multiple species and atlases.☆143Updated last week
- Automated 3D cell detection in very large images☆223Updated last week