Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mouse Visual Cortex" (Song et al., Cell Reports, 2020)
☆16Oct 26, 2022Updated 3 years ago
Alternatives and similar repositories for AMaSiNe
Users that are interested in AMaSiNe are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Oct 22, 2024Updated last year
- 3-D imaging visualisation through slicing☆31Jan 14, 2025Updated last year
- ImageJ plugin for building figures☆16Sep 13, 2023Updated 2 years ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆39Nov 24, 2023Updated 2 years ago
- Histology processing☆77Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Whole-brain functional ultrasound imaging in awake head-fixed mice☆18Jun 23, 2021Updated 5 years ago
- Live Mouse Tracker analysis☆36May 15, 2026Updated 2 months ago
- Tools to work with Allen Inst CCF data in matlab☆152Jul 15, 2025Updated last year
- ☆18Feb 10, 2022Updated 4 years ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆27May 22, 2022Updated 4 years ago
- BIRDS plug-in on Fiji and attached jar package☆22Oct 7, 2021Updated 4 years ago
- Automatic Mobility Based Behavioral Quantification ( Forced Swim Test, Tail Suspension Test )☆21Dec 21, 2025Updated 7 months ago
- A mouse brain histology tool for neuroscientists.☆13Feb 16, 2026Updated 5 months ago
- Bash scripts to simplify your life (let's hope so!)☆12Jul 21, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Seminar on Advanced Topics in Theoretical Neuroscience - Columbia University 2020☆11May 13, 2020Updated 6 years ago
- HiLo microscopy reconstruction with NLM denoising☆10Jan 28, 2025Updated last year
- A collection of useful MATLAB libraries☆16May 31, 2016Updated 10 years ago
- ☆14Sep 28, 2023Updated 2 years ago
- ☆15Feb 5, 2025Updated last year
- A codebase for tracking laboratory mice in videos☆14Sep 2, 2025Updated 10 months ago
- ☆58Mar 4, 2025Updated last year
- This python project is a helper package that uses power analysis to calculate required sample size for any experiment☆16Jan 3, 2025Updated last year
- plugin for openseadragon to allow selecting with the mouse☆12May 3, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Utility to create a basic Python project structure with tests, CI etc.☆39Updated this week
- Advanced R programming course at EMBL, 3-4 April 2017☆11Apr 5, 2017Updated 9 years ago
- Evaluation of the segmented vascular structures of the retina of our eye obtained through fundus photography using Machine learning techn…☆11Oct 2, 2024Updated last year
- Matlab package implementing blind deconvolution method for neural spike recovery☆14Sep 20, 2016Updated 9 years ago
- ☆18Feb 1, 2024Updated 2 years ago
- A MATLAB toolbox for running behavioral neuroscience experiments and managing data☆33May 28, 2024Updated 2 years ago
- Automatic Gait Analysis in Python☆32Updated this week
- Ensembling and kalman smoothing for pose estimation☆39Updated this week
- Facemap: Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also incl…☆199Jan 26, 2026Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆14Jan 4, 2023Updated 3 years ago
- Jax implementation of normcorre☆15Jan 25, 2025Updated last year
- ☆14Jan 12, 2022Updated 4 years ago
- Pre-processing pipeline for widefield data☆13Dec 11, 2020Updated 5 years ago
- MultiModal Big Image Data Sharing and Exploration☆20Jan 13, 2023Updated 3 years ago
- Method container for computational neuroscience on brains.☆30Oct 12, 2025Updated 9 months ago
- Automated parallel code reviewer using AI Coding Agent CLIs☆17Updated this week