Alternatives and similar repositories for AMaSiNe

Users that are interested in AMaSiNe are comparing it to the libraries listed below

• PrincetonUniversity / BrainPipe
  ☆18Updated 3 years ago
• bkntr / brainways
  Brainways
  ☆21Updated 2 months ago
• brainglobe / brainglobe-heatmap
  Rendering anatomical heatmaps with brainrender and matplotlib
  ☆44Updated 3 weeks ago
• petersaj / AP_histology
  Histology processing
  ☆71Updated last month
• lahammond / BrainJ
  Fiji pipeline for automated serial section reconstruction and mouse brain analysis.
  ☆29Updated 2 years ago
• dterstege / FASTMAP
  ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing
  ☆23Updated 3 years ago
• PolarBean / DeepSlice
  A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.
  ☆106Updated 2 months ago
• brainglobe / slicereg
  A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
  ☆36Updated last year
• neuroinformatics-unit / course-swc-timeseries-analysis-2023
  ☆10Updated 2 years ago
• SWC-Advanced-Microscopy / BakingTray
  Serial-section automated anatomy extension for ScanImage
  ☆17Updated 2 months ago
• Whitlock-Group / HERBS
  ☆52Updated last year
• brainglobe / brainglobe-space
  Anatomical space conventions made easy.
  ☆10Updated 3 weeks ago
• Gubra-ApS / LSFM-mouse-brain-atlas
  ☆18Updated 3 years ago
• SpikeInterface / probeinterface_library
  Collection of probe description for probeinterface
  ☆16Updated 3 weeks ago
• brainglobe / brainrender-napari
  A napari plugin to render BrainGlobe atlases and associated data as layers.
  ☆22Updated 3 weeks ago
• easy-electrophysiology / easy-electrophysiology-analysis
  Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)
  ☆17Updated 7 months ago
• neuroinformatics-unit / swc-hpc-pose-estimation
  Pose estimation scripts to be run on the SWC HPC cluster
  ☆12Updated last year
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆52Updated 2 years ago
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆27Updated 6 years ago
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 5 years ago
• DeNardoLab / BehaviorDEPOT
  Repository for BehaviorDEPOT pipeline app files and source code
  ☆38Updated last year
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆138Updated 3 weeks ago
• brainglobe / BrainGlobe
  General information, resources and dicussions for the BrainGlobe project.
  ☆11Updated 8 months ago
• neuroinformatics-unit / actions
  Re-usable GitHub Action scripts
  ☆12Updated 3 weeks ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated last year
• alihaydaroglu / suite3d
  Fast, volumetric cell detection. In development.
  ☆20Updated 4 months ago
• wildrootlab / SHARCQ
  Tools to register histological section images and cell count locations to mouse brain atlas
  ☆28Updated 3 years ago
• brainglobe / brainglobe-napari-io
  Read and write files from the BrainGlobe neuroanatomy suite
  ☆14Updated 3 weeks ago
• brainglobe / cellfinder
  Automated 3D cell detection in very large images
  ☆219Updated 3 weeks ago
• neuroinformatics-unit / spikewrap
  A package to manage electrophysiology analysis.
  ☆23Updated last week