Alternatives and similar repositories for AMaSiNe

Users that are interested in AMaSiNe are comparing it to the libraries listed below

• bkntr / brainways
  Brainways
  ☆18Updated 2 weeks ago
• brainglobe / brainglobe-heatmap
  Rendering anatomical heatmaps with brainrender and matplotlib
  ☆41Updated this week
• PrincetonUniversity / BrainPipe
  ☆18Updated 3 years ago
• lahammond / BrainJ
  Fiji pipeline for automated serial section reconstruction and mouse brain analysis.
  ☆29Updated last year
• Gubra-ApS / LSFM-mouse-brain-atlas
  ☆18Updated 3 years ago
• ryhattori / PatchWarp
  Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.
  ☆25Updated last year
• petersaj / AP_histology
  Histology processing
  ☆65Updated last month
• wildrootlab / SHARCQ
  Tools to register histological section images and cell count locations to mouse brain atlas
  ☆26Updated 3 years ago
• DeNardoLab / BehaviorDEPOT
  Repository for BehaviorDEPOT pipeline app files and source code
  ☆38Updated 8 months ago
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆49Updated last year
• dterstege / FASTMAP
  ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing
  ☆21Updated 2 years ago
• brainglobe / brainrender-napari
  A napari plugin to render BrainGlobe atlases and associated data as layers.
  ☆22Updated this week
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆25Updated 6 years ago
• PolarBean / DeepSlice
  A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.
  ☆96Updated last month
• nel-lab / FIOLA
  ☆34Updated 2 weeks ago
• Whitlock-Group / HERBS
  ☆51Updated 9 months ago
• NicoKiaru / ABBA-Python
  How to use Aligning Big Brains and Atlases with Python
  ☆15Updated 2 years ago
• brainglobe / brainglobe-template-builder
  Build unbiased anatomical templates from individual images
  ☆11Updated this week
• NTCColumbia / moco
  motion correction
  ☆17Updated 2 years ago
• Neural-Systems-at-UIO / nutil
  https://nutil.readthedocs.io/en/latest/
  ☆12Updated 3 weeks ago
• JingyiGF / HERBS
  ☆19Updated last year
• BIOP / ijp-imagetoatlas
  ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
  ☆49Updated 3 months ago
• CaliAli-PV / CaliAli
  Calcium imaging inter-session alignment
  ☆10Updated last week
• neuroinformatics-unit / course-swc-timeseries-analysis-2023
  ☆10Updated 2 years ago
• brainglobe / brainglobe-space
  Anatomical space conventions made easy.
  ☆10Updated last month
• easy-electrophysiology / easy-electrophysiology-analysis
  Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)
  ☆16Updated 2 months ago
• SWC-Advanced-Microscopy / BakingTray
  Serial-section automated anatomy extension for ScanImage
  ☆13Updated 3 weeks ago
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 4 years ago
• brainglobe / brainglobe-napari-io
  Read and write files from the BrainGlobe neuroanatomy suite
  ☆14Updated this week
• SpikeInterface / probeinterface_library
  Collection of probe description for probeinterface
  ☆13Updated 2 months ago