brainglobe / brainregLinks
Automated 3D brain registration with support for multiple species and atlases.
☆134Updated this week
Alternatives and similar repositories for brainreg
Users that are interested in brainreg are comparing it to the libraries listed below
Sorting:
- A Python interface to access neuroanatomical atlases☆156Updated last week
- Automated 3D cell detection in very large images☆216Updated this week
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆103Updated last month
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated last year
- Segmentation of anatomical structures in a common coordinate space☆33Updated this week
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆44Updated this week
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆52Updated last week
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated last year
- ☆45Updated 5 years ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆123Updated 2 weeks ago
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆100Updated 3 weeks ago
- The ImageJ framework for quantification of neuronal anatomy☆50Updated this week
- Efficient cell detection in large images using cellfinder in napari☆22Updated last year
- ☆34Updated 2 months ago
- Brainways☆19Updated 2 months ago
- ☆18Updated 3 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆50Updated last year
- Platform for Calcium Imaging analysis. DEPRECATED.☆61Updated last year
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆22Updated 3 years ago
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Updated 9 months ago
- ☆52Updated 11 months ago
- Tools for distributed alignment of massive images☆85Updated 2 weeks ago
- Live Mouse Tracker analysis☆32Updated 2 months ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated last year
- GPU-based 3D non-rigid volumetric registration☆39Updated 2 months ago
- Histology processing☆67Updated 3 weeks ago
- CloudReg☆11Updated last year
- a napari plugin for labeling and refining keypoint data within DeepLabCut projects☆57Updated 6 months ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆150Updated this week