Automated 3D brain registration with support for multiple species and atlases.
☆147May 1, 2026Updated this week
Alternatives and similar repositories for brainreg
Users that are interested in brainreg are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Segmentation of anatomical structures in a common coordinate space☆36Updated this week
- Automated 3D brain registration in napari with support for multiple species and atlases.☆16Jan 5, 2024Updated 2 years ago
- Visualise brainreg registration output☆10Nov 20, 2021Updated 4 years ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆51Apr 9, 2026Updated 3 weeks ago
- Automated 3D cell detection in very large images☆226Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A Python package to download neuronal morphologies☆18Apr 8, 2026Updated 3 weeks ago
- A Python interface to access neuroanatomical atlases☆180Updated this week
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Nov 26, 2020Updated 5 years ago
- Build unbiased anatomical templates from individual images☆12Updated this week
- A Python package to visualise neuroanatomical data in atlas space☆644Apr 15, 2026Updated 2 weeks ago
- Registration to BrainGlobe atlases in napari using Elastix☆29Updated this week
- Efficient cell detection in large images using cellfinder in napari☆22Jan 5, 2024Updated 2 years ago
- General information, resources and dicussions for the BrainGlobe project.☆11Feb 21, 2025Updated last year
- Anatomical space conventions made easy.☆12Apr 8, 2026Updated 3 weeks ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Fancier logging with python.☆16Apr 8, 2026Updated 3 weeks ago
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆24Updated this week
- Standalone cellfinder cell detection algorithm☆20Jan 3, 2024Updated 2 years ago
- ☆11Oct 21, 2025Updated 6 months ago
- Read and write files from the BrainGlobe neuroanatomy suite☆15Apr 9, 2026Updated 3 weeks ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆39Nov 24, 2023Updated 2 years ago
- NIU website on common software problems and their troubleshooting☆10Feb 13, 2026Updated 2 months ago
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆93Jul 16, 2021Updated 4 years ago
- Lightweight data specification for systems neuroscience, inspired by BIDS.☆21Dec 16, 2025Updated 4 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- brainglobe.info website☆15Updated this week
- ☆10Mar 15, 2023Updated 3 years ago
- Code for recreating the figures in the brainrender paper (Claudi et al. 2020)☆12Dec 11, 2020Updated 5 years ago
- A package to manage electrophysiology analysis.☆23Apr 27, 2026Updated last week
- Loading and saving of image data.☆10Feb 9, 2024Updated 2 years ago
- Re-usable GitHub Action scripts☆14Updated this week
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆57Updated this week
- Mix-and-match computer vision tools for your animal behaviour analysis☆28Updated this week
- An R toolbox for analysing movement across space and time☆11Jan 16, 2026Updated 3 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆140Apr 23, 2026Updated last week
- Pose estimation scripts to be run on the SWC HPC cluster☆12Dec 5, 2023Updated 2 years ago
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 3 years ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆120Aug 18, 2025Updated 8 months ago
- Generate a package-manager-friendly mouse brain atlases collection.☆22Aug 4, 2023Updated 2 years ago
- MagellanMapper is a graphical interface for 3D bioimage annotation, atlas registration, and regional quantification☆22Mar 30, 2026Updated last month
- Utility to create a basic Python project structure with tests, CI etc.☆38Apr 15, 2026Updated 2 weeks ago