Tools to register histological section images and cell count locations to mouse brain atlas
☆27May 22, 2022Updated 4 years ago
Alternatives and similar repositories for SHARCQ
Users that are interested in SHARCQ are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools to work with Allen Inst CCF data in matlab☆154Jul 15, 2025Updated last year
- Fiber Photometry Modular Analysis Tool Suite☆44Jul 26, 2021Updated 5 years ago
- ☆41Mar 4, 2024Updated 2 years ago
- Repository for BehaviorDEPOT pipeline app files and source code☆44Jul 9, 2026Updated 2 months ago
- Histology processing☆80Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆23Jul 4, 2022Updated 4 years ago
- UCLA Multiphoton Miniature Microscope☆18May 19, 2025Updated last year
- Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…☆16Oct 26, 2022Updated 3 years ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆129Sep 8, 2026Updated 2 weeks ago
- MATLAB Streaming Image Viewer - a viewing and analysis platform for ultra-large 3D imaging data☆13Jul 15, 2020Updated 6 years ago
- Generate a matrix of predictors corresponding to different behavioral variables and process a regression-based encoding model to obtain t…☆18Jul 14, 2019Updated 7 years ago
- ☆36Aug 19, 2021Updated 5 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆103Nov 14, 2024Updated last year
- Arduino Uno based signal generator for scientific applications.☆20Sep 24, 2019Updated 6 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- User-affordable and versatile light-sheet microscopy system for cleared specimens☆29Mar 14, 2025Updated last year
- R package for testing and visualizing gene list overlaps☆20Aug 22, 2016Updated 10 years ago
- Large field-of-view miniature microscope for rats and larger animals.☆18Jul 14, 2023Updated 3 years ago
- An open-source ecosystem of hardware and software for head-fixed behavior☆14Sep 25, 2025Updated 11 months ago
- Guided Photometry Analysis in Python, a free and open-source FP analysis tool.☆91Updated this week
- ☆11Mar 16, 2023Updated 3 years ago
- Image processing and tools for widefield imaging☆20Dec 7, 2019Updated 6 years ago
- AlphaTracker is a computer vision pipeline with the practical and real-time advantages , which requires minimal hardware requirements and…☆74Sep 26, 2023Updated 2 years ago
- Open Ephys plugins for tracking experiments☆10May 5, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A simple GUI for automatic and manual alignment across calcium imaging sessions.☆15Jul 2, 2026Updated 2 months ago
- Free, platform independent, behavior tracking software.☆151Sep 14, 2026Updated last week
- ☆43Sep 29, 2021Updated 4 years ago
- Example vignette for dotdotdot software☆19Apr 9, 2021Updated 5 years ago
- UNRAVEL: UN-biased high-Resolution Analysis and Validation of Ensembles using Light sheet images☆14Updated this week
- Harvey Lab miniaturized mouse VR rig hardware for virtual navigation and decision-making tasks☆46Aug 12, 2024Updated 2 years ago
- Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) …☆14Nov 20, 2018Updated 7 years ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆82Aug 12, 2026Updated last month
- Low friction belt treadmill for use in space constrained experimental rigs☆17May 22, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- The codes, software, models, protocols, and etc. for building and using MINI2P to do the freely-moving recording and analysis. More detai…☆111Oct 27, 2023Updated 2 years ago
- Microglia morphology quantification tool☆14Apr 28, 2021Updated 5 years ago
- NEW v2: https://github.com/dstolz/epsych2 Epsych is a toolbox for extending Tucker-Davis Technologies hardware and software …☆15Aug 28, 2026Updated 3 weeks ago
- Brainways☆25Aug 28, 2025Updated last year
- Fast software for high-dimensional cluster analysis using the masked EM algorithm for Gaussians mixtures☆31May 30, 2019Updated 7 years ago
- CloudReg☆11Apr 5, 2024Updated 2 years ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆28Dec 21, 2023Updated 2 years ago