Alternatives and similar repositories for SHARCQ

Users that are interested in SHARCQ are comparing it to the libraries listed below

• petersaj / AP_histology
  Histology processing
  ☆66Updated last month
• DeNardoLab / BehaviorDEPOT
  Repository for BehaviorDEPOT pipeline app files and source code
  ☆38Updated 9 months ago
• cortex-lab / allenCCF
  Tools to work with Allen Inst CCF data in matlab
  ☆135Updated last year
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆90Updated 8 months ago
• Whitlock-Group / HERBS
  ☆52Updated 10 months ago
• deisseroth-lab / multifiber
  A GUI and library for doing multi-fiber photometry
  ☆18Updated 7 years ago
• int-brain-lab / iblapps
  pyqt5 dependent applications for IBL sessions
  ☆28Updated last week
• djamesbarker / pMAT
  Fiber Photometry Modular Analysis Tool Suite
  ☆40Updated 3 years ago
• zivlab / CellReg
  Registration of cells across sessions.
  ☆75Updated 10 months ago
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆50Updated last year
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆74Updated 3 months ago
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆27Updated 6 years ago
• CaliAli-PV / CaliAli
  Calcium imaging inter-session alignment
  ☆11Updated 2 weeks ago
• VirtualBrainLab / Pinpoint
  Multi-probe trajectory planning in an intuitive 3D environment
  ☆55Updated this week
• ninehundred1 / CalciumSignalExtract
  Extract regions of interest based on correlated pixel intensity
  ☆24Updated 8 years ago
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆94Updated 11 months ago
• JinghaoLu / MIN1PIPE
  A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.
  ☆60Updated last year
• schnitzer-lab / EXTRACT-public
  EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…
  ☆75Updated 7 months ago
• ryhattori / PatchWarp
  Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.
  ☆26Updated last year
• talialerner / Photometry-Analysis-Shared
  ☆11Updated 9 years ago
• petersenpeter / CellExplorer
  CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…
  ☆103Updated 7 months ago
• SjulsonLab / methods_class
  "Approaches to Study Neural Circuits" course
  ☆65Updated 7 months ago
• lahammond / BrainJ
  Fiji pipeline for automated serial section reconstruction and mouse brain analysis.
  ☆29Updated last year
• cortex-lab / Rigbox
  A MATLAB toolbox for running behavioral neuroscience experiments and managing data
  ☆33Updated last year
• golshanilab / UCLA_2P_Miniscope
  UCLA Multiphoton Miniature Microscope
  ☆11Updated last month
• porteralab / EZcalcium
  Calcium Data Extraction and Analysis
  ☆45Updated 2 years ago
• leomol / FPA
  Fiber photometry analysis
  ☆22Updated 3 months ago
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆147Updated last month
• open-ephys / Bonsai.Miniscope
  Bonsai package for controlling headborne, calcium imaging miniscopes
  ☆12Updated last year
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆61Updated last year